Attached are the log file for ./configure and make all install. I am using the openmpi-1.10.2
Thanks -----Original Message----- From: users [mailto:users-boun...@open-mpi.org] On Behalf Of Jeff Squyres (jsquyres) Sent: Friday, 26 February, 2016 10:13 AM To: Open MPI User's List Subject: Re: [OMPI users] Problem when installing OpenMPI during make all install Can you send all the information listed here: https://www.open-mpi.org/community/help/ > On Feb 25, 2016, at 9:09 PM, Tang Cheng Yee <lsit...@nus.edu.sg> wrote: > > Hi all, > > I am new to the bioinformatics world. When I was trying to install OpenMPI, I > encountered the following error during ‘make all install’: > > > class/.libs/opal_bitmap.o:opal_bitmap.c:(.text+0x200): first defined > here > mca/timer/linux/.libs/libmca_timer_linux.a(timer_linux_component.o): In > function `pthread_equal': > timer_linux_component.c:(.text+0x8d0): multiple definition of `pthread_equal' > class/.libs/opal_free_list.o:opal_free_list.c:(.text+0x590): first > defined here > collect2: error: ld returned 1 exit status > make[2]: *** [libopen-pal.la] Error 1 > make[2]: Leaving directory `/data/chengyee/software/openmpi-1.10.2/opal' > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory `/data/chengyee/software/openmpi-1.10.2/opal' > make: *** [all-recursive] Error 1 > > I can’t find solution on the internet, please help. > My configuration command was: ./configure --prefix=/local/bin/ > --disable-mpi-fortran > > Part of my configuration log that I suspect might be helpful to track my > error (but I do not understand): > config.status: creating opal/include/opal_config.h > config.status: opal/include/opal_config.h is unchanged > config.status: creating orte/include/orte_config.h > config.status: orte/include/orte_config.h is unchanged > config.status: creating ompi/include/mpi.h > config.status: ompi/include/mpi.h is unchanged > config.status: creating oshmem/include/shmem.h > config.status: oshmem/include/shmem.h is unchanged > config.status: creating > opal/mca/hwloc/hwloc191/hwloc/include/private/autogen/config.h > config.status: > opal/mca/hwloc/hwloc191/hwloc/include/private/autogen/config.h is > unchanged > config.status: creating > opal/mca/hwloc/hwloc191/hwloc/include/hwloc/autogen/config.h > config.status: > opal/mca/hwloc/hwloc191/hwloc/include/hwloc/autogen/config.h is > unchanged > config.status: executing depfiles commands > config.status: executing > opal/mca/event/libevent2021/libevent/include/event2/event-config.h > commands > opal/mca/event/libevent2021/libevent/include/event2/event-config.h is > unchanged > config.status: executing libtool commands > > Appreciate anyone who helps. Thanks. > > With regards, > CY > > > Important: This email is confidential and may be privileged. If you are not > the intended recipient, please delete it and notify us immediately; you > should not copy or use it for any purpose, nor disclose its contents to any > other person. Thank you. > _______________________________________________ > users mailing list > us...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > Link to this post: > http://www.open-mpi.org/community/lists/users/2016/02/28580.php -- Jeff Squyres jsquy...@cisco.com For corporate legal information go to: http://www.cisco.com/web/about/doing_business/legal/cri/ _______________________________________________ users mailing list us...@open-mpi.org Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users Link to this post: http://www.open-mpi.org/community/lists/users/2016/02/28581.php ________________________________ Important: This email is confidential and may be privileged. If you are not the intended recipient, please delete it and notify us immediately; you should not copy or use it for any purpose, nor disclose its contents to any other person. Thank you.
config.out.gz
Description: config.out.gz
config.log.gz
Description: config.log.gz
make.out.gz
Description: make.out.gz
