Can you send all the information listed here:
https://www.open-mpi.org/community/help/
> On Feb 25, 2016, at 9:09 PM, Tang Cheng Yee <lsit...@nus.edu.sg> wrote:
>
> Hi all,
>
> I am new to the bioinformatics world. When I was trying to install OpenMPI, I
> encountered the following error during ‘make all install’:
>
>
> class/.libs/opal_bitmap.o:opal_bitmap.c:(.text+0x200): first defined here
> mca/timer/linux/.libs/libmca_timer_linux.a(timer_linux_component.o): In
> function `pthread_equal':
> timer_linux_component.c:(.text+0x8d0): multiple definition of `pthread_equal'
> class/.libs/opal_free_list.o:opal_free_list.c:(.text+0x590): first defined
> here
> collect2: error: ld returned 1 exit status
> make[2]: *** [libopen-pal.la] Error 1
> make[2]: Leaving directory `/data/chengyee/software/openmpi-1.10.2/opal'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/data/chengyee/software/openmpi-1.10.2/opal'
> make: *** [all-recursive] Error 1
>
> I can’t find solution on the internet, please help.
> My configuration command was: ./configure --prefix=/local/bin/
> --disable-mpi-fortran
>
> Part of my configuration log that I suspect might be helpful to track my
> error (but I do not understand):
> config.status: creating opal/include/opal_config.h
> config.status: opal/include/opal_config.h is unchanged
> config.status: creating orte/include/orte_config.h
> config.status: orte/include/orte_config.h is unchanged
> config.status: creating ompi/include/mpi.h
> config.status: ompi/include/mpi.h is unchanged
> config.status: creating oshmem/include/shmem.h
> config.status: oshmem/include/shmem.h is unchanged
> config.status: creating
> opal/mca/hwloc/hwloc191/hwloc/include/private/autogen/config.h
> config.status: opal/mca/hwloc/hwloc191/hwloc/include/private/autogen/config.h
> is unchanged
> config.status: creating
> opal/mca/hwloc/hwloc191/hwloc/include/hwloc/autogen/config.h
> config.status: opal/mca/hwloc/hwloc191/hwloc/include/hwloc/autogen/config.h
> is unchanged
> config.status: executing depfiles commands
> config.status: executing
> opal/mca/event/libevent2021/libevent/include/event2/event-config.h commands
> opal/mca/event/libevent2021/libevent/include/event2/event-config.h is
> unchanged
> config.status: executing libtool commands
>
> Appreciate anyone who helps. Thanks.
>
> With regards,
> CY
>
>
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