Re: [R-SIG-Mac] R.app not handling events

2024-12-11 Thread Helly, John via R-SIG-Mac
Ok. Mahalo for the re-direct. J. -- John Helly / San Diego Supercomputer Center / Scripps Institution of Oceanography https://www.sdsc.edu/~hellyj / 808 205 9882 / 760 8408660 On

Re: [R-SIG-Mac] R.app not handling events

2024-12-11 Thread John Fox
Dear J., What you report is, I believe, a different issue. See 10.3 in the R for macOS FAQ. Best, John On 2024-12-11 3:03 p.m., Helly, John via R-SIG-Mac wrote: Caution: External email. Aloha. I don't have an answer but more info, perhaps. I experience a similar condition with Rs

Re: [R-SIG-Mac] R.app not handling events

2024-12-11 Thread Helly, John via R-SIG-Mac
r I give up and kill it. I'm willing to run tests if there is something useful to do. J. -- John Helly / San Diego Supercomputer Center / Scripps Institution of Oceanogr

Re: [R-SIG-Mac] R.app not handling events

2024-12-11 Thread John Fox
option is changed) via the command, in a terminal, defaults write org.R-project.R NSAppSleepDisabled -bool YES I hope this helps, John -- John Fox, Professor Emeritus McMaster University Hamilton, Ontario, Canada web: https://www.john-fox.ca/ -- On 2024-12-11 12:25 p.m., Duncan Murdoch

Re: [R-SIG-Mac] R 4.3.1 fails on Mac OS 14

2023-10-04 Thread John Helly via R-SIG-Mac
Great to hear, I guess, as it bulwarks the history a bit better. J. On 10/4/23 15:29, Smith, Desmond wrote: > > Hi John, > > You are not unique in noticing the apparently random (single) > switching of R.app windows in previous versions of Mac OS X (Ventura). > > I observe

Re: [R-SIG-Mac] R 4.3.1 fails on Mac OS 14

2023-10-04 Thread John Helly via R-SIG-Mac
9DrStpvPu_tkHU8gjcUU-emPX9aYBYLNFseaGMPyuLTuGqUDCCqH-yxi6nDLsZwkVQabKItvkXdSyb6D8$ -- John Helly / San Diego Supercomputer Center / Scripps Institution of Oceanography https://www.sdsc.edu/~hellyj / 808 205 9882 / 760 8408660 ___ R-SIG-Mac mailing list R-SIG-Mac

Re: [R-SIG-Mac] R 4.3.1 fails on Mac OS X Sonoma

2023-10-03 Thread John Helly via R-SIG-Mac
SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- John Helly / San Diego Supercomputer Center / Scripps

Re: [R-SIG-Mac] Rcmdr

2023-07-31 Thread John Fox
Hello Simon, Actually the Rcmdr *does* import (and use) the tcltk2 package, but I've had no other report of this kind of problem and haven't observed it myself. Best, John -- John Fox, Professor Emeritus McMaster University Hamilton, Ontario, Canada web: https://www.john-fox.ca/

Re: [R-SIG-Mac] Serious problem with R on macOS

2023-06-08 Thread John Helly via R-SIG-Mac
R-SIG-Mac@r-project.org https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/r-sig-mac__;!!Mih3wA!Fr3HvZOZi4Vn9PoE48tKxAfj3AtOpcj4qLfq1EJ9yNCh3wNtCoPAjKvY7X98gkORFUN5nZHSXmGRARZ26vBFIhq6$ -- John Helly / San Diego Supercomputer Center / Scripps Institution of Oceanography https://www.sdsc.edu/~hellyj / 808 205 9882

Re: [R-SIG-Mac] FW: Serious problem with R on macOS

2023-06-06 Thread John Helly via R-SIG-Mac
info/r-sig-mac__;!!Mih3wA!GIE6oZkYwzBt5PoPPxbVBpthifuHm4pKyHi02HQHAvGnKu_iYdp2DZf5m2H3FKKYS3LTKCPI1guQh-OMAQh6T0nQ$ -- John Helly / San Diego Supercomputer Center / Scripps Institution of Oceanography https://www.sdsc.edu/~hellyj / 808 205 9882 / 760 8408660

Re: [R-SIG-Mac] R-SIG-Mac Digest, Vol 239, Issue 4

2023-02-07 Thread John H Maindonald
e. Kevin, does this work for you? John Maindonald. > On 7/02/2023, at 12:01, r-sig-mac-requ...@r-project.org wrote: > > Send R-SIG-Mac mailing list submissions to > r-sig-mac@r-project.org > > To subscribe or unsubscribe via the World Wide Web, visit > https:/

Re: [R-SIG-Mac] Tcl/Tk issues in arm64 build of R 4.1.0

2021-09-18 Thread John Fox
Thank you Brian and Simon for fixing these problems. Best, John On 2021-09-18 2:20 a.m., Prof Brian Ripley wrote: On 09/09/2021 19:03, John Fox wrote: Dear Simon, Philippe, and list members, I've encountered some Tcl/Tk-related issues with the Apple silicon arm64 build of R 4.1.

Re: [R-SIG-Mac] Tcl/Tk issues in arm64 build of R 4.1.0

2021-09-10 Thread John Fox
Dear Brian, Thanks for this. When the Tktable package is available in the arm64 macOS binary, I'll test it. Best, John On 2021-09-10 1:54 a.m., Prof Brian Ripley wrote: On 09/09/2021 19:59, Prof Brian Ripley wrote: On 09/09/2021 19:03, John Fox wrote: Dear Simon, Philippe, and

Re: [R-SIG-Mac] Tcl/Tk issues in arm64 build of R 4.1.0

2021-09-09 Thread John Fox
Dear Philippe, Thanks for getting back to me. On 2021-09-09 10:42 p.m., Philippe GROSJEAN wrote: Dear John, The tcltk2 package on CRAN includes tablelist version 5.5. The latest development version on https://github.com/SciViews/tcltk2 <https://github.com/SciViews/tcltk2> includes tab

Re: [R-SIG-Mac] Tcl/Tk issues in arm64 build of R 4.1.0

2021-09-09 Thread John Fox
package with these builds, for backwards compatibility (perhaps not just for the Rcmdr package). Your instructions for including tktablelist with the Rcmdr package seem clear, and I'll give that a try in case TkTable continues to be unavailable in the arm64 build. Best, John On 2021-09

Re: [R-SIG-Mac] Tcl/Tk issues in arm64 build of R 4.1.0

2021-09-09 Thread John Fox
Dear Brian, Thank you for responding so quickly. Please see below: On 2021-09-09 2:59 p.m., Prof Brian Ripley wrote: On 09/09/2021 19:03, John Fox wrote: Dear Simon, Philippe, and list members, I've encountered some Tcl/Tk-related issues with the Apple silicon arm64 build of R 4.1.

[R-SIG-Mac] Tcl/Tk issues in arm64 build of R 4.1.0

2021-09-09 Thread John Fox
but as far as I know, that plan hasn't yet materialized. If I knew how to supply a Tcl/Tk package in an R package, I could put Tablelist directly in the Rcmdr. Any help would be greatly appreciated. John -- John Fox, Professor Emeritus McMaster University Hamilton, Ontario, Canada web: ht

[R-SIG-Mac] R.app spontaneously switching windows during editing

2021-08-14 Thread John Helly via R-SIG-Mac
limiters) and I can't find anything or anyone else that complains about this. Am I the only one? Any suggestions for debugging this would be welcome.  sessionInfo below. J. Helly. -- John Helly, University of California, San Diego / San Diego Supercomputer Center / Scripps Institution of Oc

Re: [R-SIG-Mac] [External] Re: more rgl problems

2021-02-20 Thread John Fox
Dear Rich, I see R-4.0.4.pkg (not RC) at <https://cran.r-project.org/bin/macosx/>. Perhaps refresh the page in your browser? Best, John John Fox, Professor Emeritus McMaster University Hamilton, Ontario, Canada web: https://socialsciences.mcmaster.ca/jfox/ On 2021-02-20 10:45 a.m., R

Re: [R-SIG-Mac] Please test R 4.0.4 RC

2021-02-16 Thread John Fox
Dear Simon, I just installed R 4.0.4 and the warning has disappeared. I expect that you know that but thought that it might be useful to confirm it just in case. Best, John On 2021-02-12 9:05 p.m., John Fox wrote: Dear Simon, I'm still seeing the warning on a MacBook Pro with a tou

Re: [R-SIG-Mac] Please test R 4.0.4 RC

2021-02-12 Thread John Fox
brary/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib locale: [1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_4.0

Re: [R-SIG-Mac] [External] summary() suddently producing weird NULL: values for factors and character attributes

2020-12-14 Thread John Helly via R-SIG-Mac
net.common_4.3.0  crayon_1.3.4 > On 12/13/20 18:22, Richard M. Heiberger wrote: please send to the list the output from both: dput(head(P2)) utils::sessionInfo() This is the Macintosh list. Is this specifically a Macintosh problem? On Sun, Dec 13, 2020 at 6:32 PM John Helly via R-SIG-Mac &

[R-SIG-Mac] summary() suddently producing weird NULL: values for factors and character attributes

2020-12-13 Thread John Helly via R-SIG-Mac
27;numeric','numeric','numeric','numeric')) P2 is a subset of PRISM. J. -- John Helly, University of California, San Diego / San Diego Supercomputer Center / Scripps Institution of Oceanography / 760 840 8660 mobile / http://www.sdsc.edu/~hellyj ORCID ID:

Re: [R-SIG-Mac] R, FORTRAN and Apple Silicon

2020-08-24 Thread John Helly via R-SIG-Mac
3/__https://twitter.com/jimhester_/status/1292821727165194240__;!!Mih3wA!XBd8e0aklPimxl7B4w7FK7p3Z_EjeXxQRUyaT8xsKavf2ftfTcos4EzlsekNOpo$ >> >> >> [[alternative HTML version deleted]] >> >> ___ >> R-SIG-Mac mailing list >> R-SIG-Mac@r-project.org >> htt

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

2020-06-07 Thread John Helly via R-SIG-Mac
Range:desiredNumberOfLines:isSoft:] + 1106 >>> (UIFoundation + 390033) [0x7fff61a11391] >>> >>> >>> >>> 51 -[NSATSTypesetter >>> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:] >>> + 283 (UIFoundation + 396147) [0x7fff61a12b73] >>> >

Re: [R-SIG-Mac] Catalina Crashes R

2020-06-01 Thread John Helly via R-SIG-Mac
KernSmooth')" to >> look at the DESCRIPTION file, without a problem. >> >> >>Spencer Graves >> >> >> On 2020-05-21 09:49, Joseph Vanterpool wrote: >>> Hello, >>> >>> Yesterday, I started using the John Hopkin

Re: [R-SIG-Mac] R.app GUI 1.71 (7827) crashes on Catalina: Problem identified

2020-05-23 Thread John Helly via R-SIG-Mac
. J. On 5/23/20 13:03, John Helly wrote: > Aloha. > > If I setwd, the R.app works.  It will not work with whatever default it > is using. > > J. > > On 5/23/20 12:26, John Helly wrote: >> Aloha. >> >> Just tested R.app on a clean Catalina system and

Re: [R-SIG-Mac] R.app GUI 1.71 (7827) crashes on Catalina: Problem identified

2020-05-23 Thread John Helly via R-SIG-Mac
Well, when I retry on 'clean' system, R.app runs fine even if the *.plist file is there.  J. On 5/23/20 13:14, John Helly wrote: > Aloha. > > If I delete: > > /Users//Library/Preferences/org.R-project.R.plist > > then R.app will work.  If that file is pres

Re: [R-SIG-Mac] R.app GUI 1.71 (7827) crashes on Catalina

2020-05-23 Thread John Helly via R-SIG-Mac
Sorry. Take it back.  It started in Xcode, not R.app. J. On 5/23/20 13:03, John Helly wrote: > Aloha. > > If I setwd, the R.app works.  It will not work with whatever default it > is using. > > J. > > On 5/23/20 12:26, John Helly wrote: >> Aloha. >> >> Ju

Re: [R-SIG-Mac] R.app GUI 1.71 (7827) crashes on Catalina

2020-05-23 Thread John Helly via R-SIG-Mac
Aloha. If I setwd, the R.app works.  It will not work with whatever default it is using. J. On 5/23/20 12:26, John Helly wrote: > Aloha. > > Just tested R.app on a clean Catalina system and it opens the same file > that fails on an upgraded system.  So next test should be after

Re: [R-SIG-Mac] R.app GUI 1.71 (7827) crashes on Catalina

2020-05-23 Thread John Helly via R-SIG-Mac
Aloha. Just tested R.app on a clean Catalina system and it opens the same file that fails on an upgraded system.  So next test should be after a complete uninstall of R.app (maybe R itself as well?).  How does one do a complete uninstall? J. On 5/23/20 12:08, John Helly wrote: > Aloha. &g

Re: [R-SIG-Mac] R.app GUI 1.71 (7827) crashes on Catalina

2020-05-23 Thread John Helly via R-SIG-Mac
;>>>>>> >>>>>>>>>>> On Thu, Apr 30, 2020 at 6:07 AM Hiroshi Hakoyama >>>>>>>>>>> wrote: >>>>>>>>>>>> Dear All, >>>>>>>>>>>> >>>>>>>&

Re: [R-SIG-Mac] Graphic problem Rcmdr

2020-04-29 Thread Fox, John
k that it could be a general Mac problem, because R.app works with the Rcmdr for me and others. At least you now have a couple of solutions. Best, John > > JB > >> On 29 Apr 2020, at 18:18, Fox, John wrote: >> >> Dear JB, >> >> If you use the Rcmdr with R

Re: [R-SIG-Mac] Graphic problem Rcmdr

2020-04-29 Thread Fox, John
, then that might work too. Peter: Thanks for chiming in. Best, John > -Original Message- > From: jean benoit TANIS > Sent: Wednesday, April 29, 2020 1:04 PM > To: peter dalgaard > Cc: Fox, John ; R-Sig-Mac > Subject: Re: [R-SIG-Mac] Graphic problem Rcmdr > >

Re: [R-SIG-Mac] Graphic problem Rcmdr

2020-04-29 Thread Fox, John
mpt. Perhaps others will think of additional suggestions. Best, John > On Apr 29, 2020, at 2:18 AM, jean benoit TANIS wrote: > > Hi, > > I recently downloaded 4.0.0 and the Rcmdr package with dependencies (I used > to work on R2.6 on Windows). > > When I load the Rcmdr

Re: [R-SIG-Mac] Using XQuartz - any known issues?

2020-04-22 Thread Fox, John
ror," but as a previously unnoticed (by me) consequence of installing XQuartz for the first time. Best, John > On Apr 22, 2020, at 5:06 AM, ANDERSON Niall wrote: > > Thanks to everyone who has responded. > > The consensus view seems to be that the reboot after initial insta

Re: [R-SIG-Mac] Using XQuartz - any known issues?

2020-04-22 Thread Fox, John
Dear Simon, Thanks for the explanation -- it makes sense of what Niall and some of his students observed and why I haven't seen this problem, because XQuartz was first installed on my Mac years ago. Best, John > On Apr 21, 2020, at 7:24 PM, Simon Urbanek > wrote: > > Jus

[R-SIG-Mac] Using XQuartz - any known issues?

2020-04-21 Thread Fox, John
I neglected to include the list in my reply, which appears below.. John Begin forwarded message: From: John Fox <j...@mcmaster.ca> Subject: Re: [R-SIG-Mac] Using XQuartz - any known issues? Date: April 21, 2020 at 10:43:33 AM EDT To: ANDERSON

Re: [R-SIG-Mac] Using XQuartz - any known issues?

2020-04-20 Thread Fox, John
8 GB It might help to have some more information. I assume that you're using the most recent versions of R, the Rcmdr package, and other packages, and a recent version of macOS. What Mac do you have, and did you reboot it after installing XQuartz? If you updated R, did you reinst

Re: [R-SIG-Mac] Error when fitting a brms model, maybe associated with Catalina MacOS

2019-12-14 Thread Fox, John
macOS rstan users. I hope this helps, John - John Fox, Professor Emeritus McMaster University Hamilton, Ontario, Canada Web: http::/socserv.mcmaster.ca/jfox > On Dec 14, 2019, at 6:28 PM, Manuel Spínola wrote: > > Dear list members, > > I up

Re: [R-SIG-Mac] Error message reading files in R Commander

2019-11-25 Thread Fox, John
omments below: > On Nov 25, 2019, at 2:25 PM, Jose G Conde Santiago > wrote: > > Dear John. > > My apologies, and thanks for your patience. This is what I did today: > > 1. I read the data set using the R Commander menu “Data” -> “Load dataset”. > When I am work

Re: [R-SIG-Mac] Error message reading files in R Commander

2019-11-25 Thread Fox, John
omments below: > On Nov 25, 2019, at 2:25 PM, Jose G Conde Santiago > wrote: > > Dear John. > > My apologies, and thanks for your patience. This is what I did today: > > 1. I read the data set using the R Commander menu “Data” -> “Load dataset”. > When I am work

Re: [R-SIG-Mac] Error message reading files in R Commander

2019-11-25 Thread Fox, John
Dear José, > On Nov 25, 2019, at 10:17 AM, Jose G Conde Santiago > wrote: > > Dear John, > > To keep the session as simple as possible, this time I did not configure R > Commander to send the output to the R console. > > This is what I did. > > 1. Load the

Re: [R-SIG-Mac] Error message reading files in R Commander

2019-11-23 Thread Fox, John
> Thanks for your prompt reply, John. > > I clicked on the "Data set" button to read an R dataset. Then I clicked on > the "View data set" button to view it, and closed the view window. I tried to > read the same file again, and that is where I get the error messa

Re: [R-SIG-Mac] Error message reading files in R Commander

2019-11-22 Thread Fox, John
r/Duncan.txt>. Can you elaborate what you did and ideally create a reproducible example of the problem? Best, John - John Fox, Professor Emeritus McMaster University Hamilton, Ontario, Canada Web: http::/socserv.mcmaster.ca/jfox > On Nov 22, 2019, at 2:23 PM,

Re: [R-SIG-Mac] Problem with R commander installation under MAC OX 10.10

2018-11-24 Thread Fox, John
Dear Fran, Please include the R-SIG-Mac list in a discussion started on the list. > On Nov 24, 2018, at 3:16 PM, FRANCISCO JOSE OTERO FERRER > wrote: > > Dear John, > > thanks again. I had tried “R CMD INSTALL”: > > MacBook-Pro-de-Francisco-2:~ franciscoot

Re: [R-SIG-Mac] Problem with R commander installation under MAC OX 10.10

2018-11-24 Thread Fox, John
ounter problems: The Rcmdr package depends on many other packages and some of these may also be unavailable in their current versions for your version of macOS or may be incompatible with the older version of the Rcmdr that you install. I hope this helps,

Re: [R-SIG-Mac] bug on Rcmdr Mac OS X

2017-12-29 Thread Fox, John
1.0-7 of the RcmdrMisc package, which I've already submitted to CRAN, to be released when the new Hmisc appears. I hope that this helps, John - John Fox, Professor Emeritus McMaster University Hamilton, Ontario, Canada Web: socialsciences.mcmaster.ca/jfox/ >

[R-SIG-Mac] Macports installation problem

2017-11-02 Thread John
d Macports, but one file called "port" which is located at loca/bin/port" How should I do it? Thanks, John *** Last login: Sun Oct 15 02:52:49 on console Johns-MacBook-Pro:~ john$ /opt/local/bin/port ; exit; MacPorts 2.4.2 Entering shell mode... ("help" for h

Re: [R-SIG-Mac] Macports installation problem

2017-10-18 Thread John
sted that posting in R-SIG-Mac was the wrong way to do > acquire such skills and I agree. Appears the poster has not yet developed > the habit of reading supporting online documentation. He certainly did not > do so regarding R-SIG-Mac. My opinion: A person who chooses not to read or > he

[R-SIG-Mac] Macports installation problem

2017-10-17 Thread John
d Macports, but one file called "port" which is located at loca/bin/port" How should I do it? Thanks, John *** Last login: Sun Oct 15 02:52:49 on console Johns-MacBook-Pro:~ john$ /opt/local/bin/port ; exit; MacPorts 2.4.2 Entering shell mode... ("help" for h

Re: [R-SIG-Mac] Rcmdr start-up issue

2017-10-04 Thread Fox, John
want to understand what went wrong in case someone else has a similar problem in future. Best, John > -Original Message- > From: Robert Baer [mailto:rb...@atsu.edu] > Sent: Wednesday, October 4, 2017 10:09 AM > To: Fox, John > Cc: r-sig-mac@r-project.org > Subject

Re: [R-SIG-Mac] Rcmdr start-up issue

2017-10-03 Thread Fox, John
, please run “sudo xcodebuild -license” and then retry this command.” But the Rcmdr loaded properly both before *and* after I followed the instruction in the message. Best, John - John Fox, Professor Emeritus McMaster University Hamilton, Ontario, Canada Web: http

Re: [R-SIG-Mac] Rcmdr start-up issue

2017-10-03 Thread Fox, John
n exception is that I haven't yet installed the latest version of Xcode, which I'll do now to see what happens. It's unclear to me from your message whether the Rcmdr package worked before you installed the newest Xcode. I hope this helps, John

Re: [R-SIG-Mac] R commander fonts on R 3.4.0

2017-07-07 Thread Fox, John
Dear Simon and Peter, Thank you very much for taking care of this -- the fonts look much better now. Best, John - John Fox, Professor McMaster University Hamilton, Ontario Canada L8S 4M4 web: socserv.mcmaster.ca/jfox From

Re: [R-SIG-Mac] Rcmdr¡

2017-06-19 Thread Fox, John
.ca/jfox/Misc/Rcmdr/installation-notes.html> might help, but they don't address security issues. You might also consult the posting guide for the R email lists at < https://www.r-project.org/posting-guide.html>, which has useful information about how to ask a question. I hope

Re: [R-SIG-Mac] R commander fonts on R 3.4.0

2017-05-17 Thread Fox, John
Dear Peter, First, thank you very much for persisting with this. I greatly appreciate it. > -Original Message- > From: Peter Dalgaard [mailto:pda...@gmail.com] > Sent: Wednesday, May 17, 2017 2:52 PM > To: Simon Urbanek > Cc: Fox, John ; r-sig-mac@r-project.org > Subje

Re: [R-SIG-Mac] R commander fonts on R 3.4.0

2017-05-16 Thread Fox, John
configure TRadiobutton -font RcmdrDefaultFont") standard.title.color <- as.character(.Tcl("ttk::style lookup TLabelframe.Label -foreground")) title.color <- setOption("title.color", standard.title.color) if (tolower(title.color) == "black"

Re: [R-SIG-Mac] R commander fonts on R 3.4.0

2017-05-15 Thread Fox, John
these are respectively the helvetica and courier fonts. In any event, I'm glad that you seem to have solved your problem. John > -Original Message- > From: Jose G Conde Santiago [mailto:jose.con...@upr.edu] > Sent: Monday, May 15, 2017 3:18 PM > To: Simon Urbanek ; Fox, J

Re: [R-SIG-Mac] R commander fonts on R 3.4.0

2017-05-09 Thread Fox, John
would the fonts appear properly for him with R 3.3.3 but not R 3.4.0? I thought that someone more familiar with Macs than I am might spot the cause of the problem from Jose’s screenshot, and so I suggested that he write to the R-SIG-Mac list. Best, John - John

Re: [R-SIG-Mac] Rcmdr and macOS Sierra

2016-12-15 Thread Fox, John
[49] data.table_1.10.0 assertthat_0.1 minqa_1.2.4 rpart_4.1-10 [53] nnet_7.3-12 nlme_3.1-128 snip -- And here's a guess: Perhaps you didn't restart your Mac (or alternatively log out of and back into your account) before

Re: [R-SIG-Mac] R editor freezes after running a script

2016-10-20 Thread Fox, John
Dear Jose, Is it possible that you have app nap turned on for R.app, as it is by default? If so, R can appear to freeze when the its window isn't visible. If you experience the problem again, you might try turning app nap off via the Rcmdr Tools menu. I hope this helps,

Re: [R-SIG-Mac] R commander installation problem (Mac OSX Capitan)

2016-06-01 Thread Fox, John
ng XQuartz, something that the R Commander Mac installation notes tell you to do. It's a good idea to keep the R-SIG-Mac list in the loop so that others who experience a similar problem will see the solution, so I've cc'ed the list. Best, John > -Original Message- > From:

Re: [R-SIG-Mac] R commander installation problem (Mac OSX Capitan)

2016-06-01 Thread Fox, John
ou bypass R.app. Finally, try reinstalling everything -- R, the Rcmdr package, and XQuartz. Reboot and try again. Let us know what happens. I hope this helps, John - John Fox, Professor McMaster University Hamilton, Ontario Canada L8S 4M4 Web: socserv.mcmaster.ca/jfox

Re: [R-SIG-Mac] R code chunks

2016-04-12 Thread John Magnotti
/pipermail/r-sig-mac/2015-March/011335.html The solution suggested by Ian Gow is in the first reply. hope that helps, John On Tue, Apr 12, 2016 at 8:05 AM, Mollie Brooks wrote: > Hi Ivan, > > Using the R GUI and the built-in editor, you should be able to format your > document in

Re: [R-SIG-Mac] R GUI is freezing

2016-02-11 Thread John Magnotti
My colleague and I have experienced similar problems for a while. Although I don't necessarily recommend it, we've switched to RStudio in the meantime. Now that RStudio allows for splitting code files into separate windows, you can create a reasonably similar experience to R-gui. Jo

Re: [R-SIG-Mac] graphics problem from Macintosh system software

2015-12-17 Thread John Maindonald
I used to get this type of message from time to time when I was plotting to the RStudio graphics device. Enlarging the graphics panel seemed to fix it. I’ve not seen it recently, with R-3.2.2 John Maindonald email: john.maindon...@anu.edu.au > On 18/12/2015, at 10:28, Richar

Re: [R-SIG-Mac] parLapply is not using all nodes

2015-12-11 Thread John Magnotti
Hi Yan, Sorry it wasn't the simple answer. On my machine, your code creates 3 R processes (#cores -1) and they are all active. If you have an even simpler example say parLapply(cl, 1:8, function_that_takes_a_while) does that get all the cores going? John On Fri, Dec 11, 2015 at 6:

Re: [R-SIG-Mac] parLapply is not using all nodes

2015-12-11 Thread John Magnotti
Hello Yan, I think parLapply is just assigning a core for every item in the list, G, you supplied. Because you have more cores than items in the list, some of the cores won't receive any work. John On Fri, Dec 11, 2015 at 4:00 AM, ALPEROVYCH Yan wrote: > Hello, > > I have a

Re: [R-SIG-Mac] rgl crashes R.app in El Capitan

2015-10-19 Thread Fox, John
Dear José > -Original Message- > From: "José G. Conde" [mailto:jose.con...@upr.edu] > Sent: October 19, 2015 11:55 AM > To: Fox, John ; Duncan Murdoch > ; r-sig-mac@r-project.org > Subject: Re: rgl crashes R.app in El Capitan > > Hello all. > &

Re: [R-SIG-Mac] rgl crashes R.app in El Capitan

2015-10-15 Thread Fox, John
Hi Duncan, Thanks again for taking care of this. John > -Original Message- > From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com] > Sent: Thursday, October 15, 2015 2:46 PM > To: Fox, John; r-sig-mac@r-project.org > Cc: jose.con...@upr.edu > Subject: Re: rgl c

Re: [R-SIG-Mac] rgl crashes R.app in El Capitan

2015-10-15 Thread Fox, John
Hi Duncan, Thanks for looking into this. Please see below: > -Original Message- > From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com] > Sent: Thursday, October 15, 2015 12:29 PM > To: Fox, John; r-sig-mac@r-project.org > Cc: jose.con...@upr.edu > Subject: Re: rgl c

Re: [R-SIG-Mac] rgl crashes R.app in El Capitan

2015-10-13 Thread Fox, John
Dear Duncan, > -Original Message- > From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com] > Sent: Tuesday, October 13, 2015 3:34 PM > To: Fox, John; r-sig-mac@r-project.org > Cc: jose.con...@upr.edu > Subject: Re: rgl crashes R.app in El Capitan > > On 13/10

[R-SIG-Mac] rgl crashes R.app in El Capitan

2015-10-13 Thread Fox, John
ugh clues to diagnose the problem. John - John Fox, Professor McMaster University Hamilton, Ontario Canada L8S 4M4 web: socserv.mcmaster.ca/jfox ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

[R-SIG-Mac] rgl crashes R.app under El Capitan

2015-10-13 Thread Fox, John
t this provides enough clues to resolve the problem. Best, John ----- John Fox, Professor McMaster University Hamilton, Ontario Canada L8S 4M4 web: socserv.mcmaster.ca/jfox ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org

Re: [R-SIG-Mac] Unexpected output from round()

2015-06-12 Thread John Maindonald
e packages: [1] stats graphics grDevices utils datasets methods base John Maindonald email: john.maindon...@anu.edu.au > On 13/06/2015, at 12:39, Dennis Fisher wrote: > > R 3.2.0 > OS X > > Colleagues > > I received unexpected output from a command is

Re: [R-SIG-Mac] R.app crashes on Mac OSX 10.10.3

2015-05-19 Thread John Maindonald
earlier releases. Tonight though, when I tried R.app, there was no problem. R version 3.2.0 Patched (2015-04-19 r68206) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.10.3 (Yosemite) John Maindonald email: john.maindon...@anu.edu.au now living in Wellington, NZ. >

Re: [R-SIG-Mac] checking for pdflatex

2015-03-17 Thread John Fox
Dear JJ, > -Original Message- > From: JJ Allaire [mailto:j...@rstudio.com] > Sent: March-17-15 12:20 PM > To: John Fox > Cc: Simon Urbanek; Berend Hasselman; r-sig-mac@r-project.org > Subject: Re: [R-SIG-Mac] checking for pdflatex > > > > > Actually

Re: [R-SIG-Mac] checking for pdflatex

2015-03-17 Thread John Fox
> On Mar 17, 2015, at 10:41 AM, John Fox wrote: > > > > Dear Simon, > > > > Sorry to prolong this, but I have two additional questions: > > > > (1) Is there a reason that R.app uses a different default PATH than R in a > terminal window does? That is, why

Re: [R-SIG-Mac] checking for pdflatex

2015-03-17 Thread John Fox
d add a dialog that asks the user's permission unless an Rcmdr option for this behaviour is set, though for most users that would mean that the dialog would appear every time the Rcmdr is started. Thanks, John > -Original Message- > From: Prof Brian Ripley [mailto:rip..

Re: [R-SIG-Mac] checking for pdflatex

2015-03-17 Thread John Fox
Dear JJ, > -Original Message- > From: JJ Allaire [mailto:j...@rstudio.com] > Sent: March-17-15 11:33 AM > To: Simon Urbanek > Cc: John Fox; Berend Hasselman; r-sig-mac@r-project.org > Subject: Re: [R-SIG-Mac] checking for pdflatex > > > > > I guess that

Re: [R-SIG-Mac] checking for pdflatex

2015-03-17 Thread John Fox
wouldn't potentially surprise a user by removing a directory from the PATH. Thanks, John > -Original Message- > From: Simon Urbanek [mailto:simon.urba...@r-project.org] > Sent: March-17-15 10:34 AM > To: JJ Allaire > Cc: j...@mcmaster.ca; Berend Hasselman; r-sig-mac

Re: [R-SIG-Mac] checking for pdflatex

2015-03-17 Thread John Fox
Dear Rainer, Thanks for this. I already have a more general fix that followed from one of Simon Urbanek's posts yesterday. The sticking point now is having a CRAN package -- the Rcmdr -- mess with the PATH for the R process. Best, John On Tue, 17 Mar 2015 12:02:39 +0100 Rainer M Krug

Re: [R-SIG-Mac] checking for pdflatex

2015-03-17 Thread John Fox
produce pdf output, but that might not prove feasible. It's not clear to me why Simon hasn't adopted a fix for R.app similar to the one implemented by RStudio. That would deal with the problem more generally, but perhaps there's some consideration of which I'm unaware. B

Re: [R-SIG-Mac] checking for pdflatex

2015-03-16 Thread John Fox
Dear Simon, > -Original Message- > From: Simon Urbanek [mailto:simon.urba...@r-project.org] > Sent: March-16-15 3:57 PM > To: j...@mcmaster.ca > Cc: Berend Hasselman; r-sig-mac@r-project.org > Subject: Re: [R-SIG-Mac] checking for pdflatex > > > > On Mar

Re: [R-SIG-Mac] checking for pdflatex

2015-03-16 Thread John Fox
their help. John > -Original Message- > From: R-SIG-Mac [mailto:r-sig-mac-boun...@r-project.org] On Behalf Of > John Fox > Sent: March-16-15 2:45 PM > To: 'Berend Hasselman' > Cc: r-sig-mac@r-project.org > Subject: Re: [R-SIG-Mac] checking for pdflatex >

Re: [R-SIG-Mac] checking for pdflatex

2015-03-16 Thread John Fox
should work if pdflatex is located elsewhere (as long as it's on the path reported by path_helper), and I'll give that a try as well. Thanks again for all the help, John > -Original Message- > From: Berend Hasselman [mailto:b...@xs4all.nl] > Sent: March-16-15 2:34 PM

Re: [R-SIG-Mac] checking for pdflatex

2015-03-16 Thread John Fox
Dear Berend, > -Original Message- > From: Berend Hasselman [mailto:b...@xs4all.nl] > Sent: March-16-15 1:27 PM > To: j...@mcmaster.ca > Cc: Simon Urbanek; r-sig-mac@r-project.org > Subject: Re: [R-SIG-Mac] checking for pdflatex > > > > On 16-03-2

Re: [R-SIG-Mac] checking for pdflatex

2015-03-16 Thread John Fox
Dear Gabor, > -Original Message- > From: Gábor Csárdi [mailto:csardi.ga...@gmail.com] > Sent: March-16-15 12:39 PM > To: John Fox > Cc: Simon Urbanek; R-SIG-Mac > Subject: Re: [R-SIG-Mac] checking for pdflatex > > John, > > my guess is that on OSX, >95%

Re: [R-SIG-Mac] checking for pdflatex

2015-03-16 Thread John Fox
e, but I apparently can't rely on a locate database having been compiled -- it wasn't on my Mac -- and the overhead of compiling the locate db is excessive for a start-up check. Again, thanks for explaining the problem. John > -Original Message- > From: Simon Urban

Re: [R-SIG-Mac] checking for pdflatex

2015-03-15 Thread John Fox
Dear Jordan, I'm not looking for an R package, I'm looking for the pdflatex program. Best, John On Sun, 15 Mar 2015 21:17:53 -0400 Jordan Meyer wrote: > You may wish to try using the logical.return argument of library(). If it > returns TRUE, you could use find.package

Re: [R-SIG-Mac] checking for pdflatex

2015-03-15 Thread John Fox
Dear Ian, Thanks for this. Please see below: > -Original Message- > From: Ian Gow [mailto:iand...@gmail.com] > Sent: March-15-15 5:07 PM > To: John Fox > Cc: r-sig-mac@r-project.org > Subject: Re: [R-SIG-Mac] checking for pdflatex > > I think it's drive

[R-SIG-Mac] checking for pdflatex

2015-03-15 Thread John Fox
r the presence of pdflatex? Any help would be appreciated. Thanks, John John Fox, Professor McMaster University Hamilton, Ontario, Canada http://socserv.mcmaster.ca/jfox/ ___ R-SIG-Mac mailing list R-SI

Re: [R-SIG-Mac] tcltk problem with R 3.1.2

2015-01-26 Thread John Fox
Dear Paul, > -Original Message- > From: Paul J. Campbell [mailto:campb...@beloit.edu] > Sent: January-26-15 3:31 PM > To: j...@mcmaster.ca > Subject: tcltk problem with R 3.1.2 > > John, > > I am comparing GUIs for R (Rcmdr, RStudio, JGR) to recommend one

[R-SIG-Mac] XPCErrorDescription

2014-12-05 Thread john d
Hi there, I keep getting error messages like this one: 2014-12-04 21:26:39.155 R[50233:30990798] Communications error: { count = 1, contents = "XPCErrorDescription" => { length = 22, contents = "Connection interrupted" } }> Any suggestions? I'm running R 3.1

Re: [R-SIG-Mac] R Freezes while Document editing

2014-12-04 Thread John Magnotti
use command+z (undo) several times in a row. Maybe some thread is scanning/parsing the file after each change and it can't keep up with rapid undo? John On Thu, Dec 4, 2014 at 10:43 PM, Boris Steipe wrote: > Ah - sorry if this was unclear: > I don't know if the warning i

Re: [R-SIG-Mac] Yosemite and R

2014-10-28 Thread John Fox
Dear all, Brian Ripley has brought it my attention that R 3.1.2, due to be released soon, *does* check that X11 is present and prints an informative error message if it isn't. That's a substantial improvement. Thanks, John On Tue, 28 Oct 2014 09:43:53 -0400 "John Fox"

Re: [R-SIG-Mac] Yosemite and R

2014-10-28 Thread John Fox
ists, etc. That said, I think that there is a good solution for teachers of courses, workshops, etc.: Create -- or point to existing -- clear installation instructions that include installing XQuartz under OS X. The less tractable problem is individual users downloading and installing R from CRAN

Re: [R-SIG-Mac] Yosemite and R

2014-10-27 Thread John Maindonald
http://xquartz.macosforge.org/ ? John Maindonald email: john.maindon...@anu.edu.au phone : +61 2 (6125)3473fax : +61 2(6125)5549 Centre for Mathematics & Its Applications, Room 1194, John Dedman Mathematical Sciences Building (Building 27) Australian National University, Canb

Re: [R-SIG-Mac] Yosemite and R

2014-10-23 Thread John Fox
latex from the current session, and doesn't modify the path for the package check. The second solution, opening RStudio from a terminal, does work but is of course awkward. Best, John > -Original Message- > From: Kevin Ushey [mailto:kevinus...@gmail.com] > Sent: Thursday,

  1   2   3   >