Dear José,
Please keep the discussion on the r-sig-mac list rather than replying only to
me, so that other potentially interested individuals can follow it. I'm
therefore cc'ing this response to the list.
> On Nov 22, 2019, at 9:43 PM, Jose G Conde Santiago <jose.con...@upr.edu>
> wrote:
>
> Thanks for your prompt reply, John.
>
> I clicked on the "Data set" button to read an R dataset. Then I clicked on
> the "View data set" button to view it, and closed the view window. I tried to
> read the same file again, and that is where I get the error message.
That's different from what I understood. When you use the "Data set" button in
the Rcmdr toolbar you can choose among data sets that have *already* been read
into the workspace, assuming that there are more than one.
I still can't duplicate the problem that you report. I can repeatedly select a
data set using the button, and each time it becomes the active data set and the
data viewer window is refreshed.
> I had the same issue when I tested with R Commander and R, without RStudio.
Yes, I saw that and I can't duplicate the problem in either context.
Best,
John
>
> I will check again on Monday with the file you used.
>
> Best,
>
> José
>
> On Fri, Nov 22, 2019, 6:04 PM Fox, John <j...@mcmaster.ca> wrote:
> Dear Jose,
>
> I'm afraid that I can't duplicate this problem. I tried with the current CRAN
> version of the Rcmdr under RStudio, reading a text file repeatedly into the
> same data set. My session info is
>
> --------- snip ---------
>
> > sessionInfo()
> R version 3.6.1 (2019-07-05)
> Platform: x86_64-apple-darwin15.6.0 (64-bit)
> Running under: macOS Catalina 10.15.1
>
> Matrix products: default
> BLAS:
> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
> LAPACK:
> /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib
>
> locale:
> [1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
>
> attached base packages:
> [1] splines stats graphics grDevices utils datasets methods
> [8] base
>
> other attached packages:
> [1] Rcmdr_2.6-1 effects_4.1-4 RcmdrMisc_2.5-1 sandwich_2.5-1
> [5] car_3.0-5 carData_3.0-3
>
> loaded via a namespace (and not attached):
> [1] Formula_1.2-3 assertthat_0.2.1 latticeExtra_0.6-28
> [4] cellranger_1.1.0 pillar_1.4.2 backports_1.1.5
> [7] lattice_0.20-38 glue_1.3.1 digest_0.6.22
> [10] RColorBrewer_1.1-2 checkmate_1.9.4 minqa_1.2.4
> [13] colorspace_1.4-1 htmltools_0.4.0 Matrix_1.2-17
> [16] survey_3.36 pkgconfig_2.0.3 haven_2.2.0
> [19] purrr_0.3.3 scales_1.0.0 openxlsx_4.1.3
> [22] rio_0.5.16 lme4_1.1-21 htmlTable_1.13.2
> [25] tibble_2.1.3 relimp_1.0-5 ggplot2_3.2.1
> [28] nnet_7.3-12 lazyeval_0.2.2 survival_3.1-7
> [31] magrittr_1.5 crayon_1.3.4 readxl_1.3.1
> [34] nlme_3.1-142 MASS_7.3-51.4 forcats_0.4.0
> [37] foreign_0.8-72 class_7.3-15 tools_3.6.1
> [40] data.table_1.12.6 hms_0.5.2 mitools_2.4
> [43] tcltk2_1.2-11 stringr_1.4.0 munsell_0.5.0
> [46] cluster_2.1.0 zip_2.0.4 compiler_3.6.1
> [49] e1071_1.7-2 rlang_0.4.1 grid_3.6.1
> [52] nloptr_1.2.1 rstudioapi_0.10 htmlwidgets_1.5.1
> [55] tcltk_3.6.1 base64enc_0.1-3 boot_1.3-23
> [58] gtable_0.3.0 abind_1.4-5 DBI_1.0.0
> [61] curl_4.2 R6_2.4.0 gridExtra_2.3
> [64] zoo_1.8-6 knitr_1.25 dplyr_0.8.3
> [67] zeallot_0.1.0 nortest_1.0-4 Hmisc_4.3-0
> [70] stringi_1.4.3 Rcpp_1.0.3 vctrs_0.2.0
> [73] rpart_4.1-15 acepack_1.4.1 tidyselect_0.2.5
> [76] xfun_0.10
>
> --------- snip ---------
>
> The output that the Rcmdr generates each time in the RStudio console is
>
> Rcmdr> Duncan <-
> Rcmdr+
> read.table("/Users/johnfox/Documents/Courses/2017-2018/ICPSR/Lectures/Duncan.txt",
> Rcmdr+ header=TRUE, sep="", na.strings="NA", dec=".", strip.white=TRUE)
> RcmdrMsg: [3] NOTE: The dataset Duncan has 45 rows and 4 columns.
>
> Of course, there's a warning each time that Duncan will be overwritten, and
> the dataset in the viewer is automatically refreshed. That is, AFAICS
> everything works as it should.
>
> You can find the data file I used at
> <https://socialsciences.mcmaster.ca/jfox/Books/RCommander/Duncan.txt>.
>
> Can you elaborate what you did and ideally create a reproducible example of
> the problem?
>
> Best,
> John
>
> -----------------------------
> John Fox, Professor Emeritus
> McMaster University
> Hamilton, Ontario, Canada
> Web: http::/socserv.mcmaster.ca/jfox
>
> > On Nov 22, 2019, at 2:23 PM, Jose G Conde Santiago via R-SIG-Mac
> > <r-sig-mac@r-project.org> wrote:
> >
> > Hi,
> >
> > I am using R Commander in combination with RStudio. I configured RStudio to
> > display the output on the RStudio console.
> >
> > If I open a file in R Commander, then view the data file in R Commander and
> > then try to read the same file again using R Commander, the following error
> > message is displayed in the console and I cannot read the file with R
> > Commander:
> >
> >> Error in structure(.External(.C_dotTcl, ...), class = "tclObj") :
> >> [tcl] bad window path name “.29”.
> >
> > The message is always the same, except that the number at the end changes.
> > Here are a few more examples:
> >
> >> Error in structure(.External(.C_dotTcl, ...), class = "tclObj") :
> >> [tcl] bad window path name ".35".
> >
> >> Error in structure(.External(.C_dotTcl, ...), class = "tclObj") :
> >> [tcl] bad window path name ".51".
> >
> >> Error in structure(.External(.C_dotTcl, ...), class = "tclObj") :
> >> [tcl] bad window path name ".56".
> >
> >
> > Initially, I thought there could be a problem between R Commander and
> > RStudio, but I got the same error message under the same conditions when I
> > tested using R Commander with R alone (without RStudio).
> >
> > The files seem to be fine, since I can access them directly with R or with
> > RStudio.
> >
> > My computer is an iMac (27-inch, late 2012)
> > MacOS High Sierra version 10.13.6.
> > R version 3.6.1
> > RStudio version 1.2.5001
> > R Commander version 2.6-0
> > XQuartz 2.7.11
> >
> > Thanks.
> >
> > José
> >
> > José G. Conde, MD, MPH
> > Professor, School of Medicine
> > Medical Sciences Campus
> > University of Puerto Rico
> >
> > Tel (787) 763-9401 Fax (787) 758-5206
> >
> > Email: jose.con...@upr.edu
> >
> > _______________________________________________
> > R-SIG-Mac mailing list
> > R-SIG-Mac@r-project.org
> > https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
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