An ‘interesting’ aside is that in Monterey (12.6.2), a blank window
appears when I click on ‘PDF’ from within the RStudio help system.
Within the R GUI, there is not a problem. In either case, typing
vignette('concordance', package='survival’)
in the command line window works fine. Kevin, does this work
for you?
John Maindonald.
> On 7/02/2023, at 12:01, r-sig-mac-requ...@r-project.org wrote:
>
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> Today's Topics:
>
> 1. Re: Cannot open PDF Vignettes on Ventura (Duncan Murdoch)
> 2. Re: Cannot open PDF Vignettes on Ventura (Kevin Thorpe)
> 3. Re: Cannot open PDF Vignettes on Ventura (Simon Urbanek)
> 4. Re: Cannot open PDF Vignettes on Ventura (Kevin Thorpe)
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Mon, 6 Feb 2023 15:56:16 -0500
> From: Duncan Murdoch <murdoch.dun...@gmail.com>
> To: Kevin Thorpe <kevin.tho...@utoronto.ca>, Simon Urbanek
> <simon.urba...@r-project.org>
> Cc: "r-sig-mac@r-project.org" <r-sig-mac@r-project.org>
> Subject: Re: [R-SIG-Mac] Cannot open PDF Vignettes on Ventura
> Message-ID: <05a096f4-7590-ea0e-c7fc-a22c9fdf1...@gmail.com>
> Content-Type: text/plain; charset="utf-8"; Format="flowed"
>
> On 06/02/2023 3:47 p.m., Kevin Thorpe wrote:
>> Simon,
>>
>> Preview is my default viewer. In the finder window that came up I tried
>> selecting Preview as the viewer to use and it still failed. The following
>> errors went to the Console.
>>
>> 2023-02-06 15:43:55.448 R[62964:5174302] +[CATransaction synchronize] called
>> within transaction
>> 2023-02-06 15:43:55.568 R[62964:5174302] +[CATransaction synchronize] called
>> within transaction
>> 2023-02-06 15:44:03.253 R[62964:5174302] +[CATransaction synchronize] called
>> within transaction
>> 2023-02-06 15:44:16.012 R[62964:5174302] +[CATransaction synchronize] called
>> within transaction
>>
>> Kevin
>>
>
> Hi Kevin.
>
> If you just run `open some.pdf` in a terminal, does it open properly in
> Preview?
>
> Duncan Murdoch
>
>
>
>
> ------------------------------
>
> Message: 2
> Date: Mon, 6 Feb 2023 20:58:17 +0000
> From: Kevin Thorpe <kevin.tho...@utoronto.ca>
> To: Duncan Murdoch <murdoch.dun...@gmail.com>
> Cc: Simon Urbanek <simon.urba...@r-project.org>,
> "r-sig-mac@r-project.org" <r-sig-mac@r-project.org>
> Subject: Re: [R-SIG-Mac] Cannot open PDF Vignettes on Ventura
> Message-ID: <4b85f1eb-a812-4cef-aa1f-d0b2023c6...@utoronto.ca>
> Content-Type: text/plain; charset="utf-8"
>
> Yes, it does.
>
> Kevin
>
> --
> Kevin E. Thorpe
> Head of Biostatistics, Applied Health Research Centre (AHRC)
> Li Ka Shing Knowledge Institute of St. Michael’s Hospital
> Assistant Professor, Dalla Lana School of Public Health
> University of Toronto
> email: kevin.tho...@utoronto.ca Tel: 416.864.5776 Fax: 416.864.3016
>
>> On Feb 6, 2023, at 3:56 PM, Duncan Murdoch <murdoch.dun...@gmail.com> wrote:
>>
>> On 06/02/2023 3:47 p.m., Kevin Thorpe wrote:
>>> Simon,
>>> Preview is my default viewer. In the finder window that came up I tried
>>> selecting Preview as the viewer to use and it still failed. The following
>>> errors went to the Console.
>>> 2023-02-06 15:43:55.448 R[62964:5174302] +[CATransaction synchronize]
>>> called within transaction
>>> 2023-02-06 15:43:55.568 R[62964:5174302] +[CATransaction synchronize]
>>> called within transaction
>>> 2023-02-06 15:44:03.253 R[62964:5174302] +[CATransaction synchronize]
>>> called within transaction
>>> 2023-02-06 15:44:16.012 R[62964:5174302] +[CATransaction synchronize]
>>> called within transaction
>>> Kevin
>>
>> Hi Kevin.
>>
>> If you just run `open some.pdf` in a terminal, does it open properly in
>> Preview?
>>
>> Duncan Murdoch
>
>
>
> ------------------------------
>
> Message: 3
> Date: Tue, 7 Feb 2023 10:58:16 +1300
> From: Simon Urbanek <simon.urba...@r-project.org>
> To: Kevin Thorpe <kevin.tho...@utoronto.ca>
> Cc: Duncan Murdoch <murdoch.dun...@gmail.com>,
> "r-sig-mac@r-project.org" <r-sig-mac@r-project.org>
> Subject: Re: [R-SIG-Mac] Cannot open PDF Vignettes on Ventura
> Message-ID: <def57cf1-8973-4d26-8b52-6ed142f3c...@r-project.org>
> Content-Type: text/plain; charset="utf-8"
>
> Kevin,
>
> can you then describe in more detail what you are taking about? If you open a
> PDF vignette in R, it simply calls "open" so it will open in Preview (as that
> is your system viewer). And you have confirmed that it is what happens, so
> are you taking about something else? If so, please describe every step you
> make to reproduce whatever issue you are having.
>
> Thanks,
> Simon
>
>
> On Feb 7, 2023, at 9:58 AM, Kevin Thorpe <kevin.tho...@utoronto.ca> wrote:
>>
>> Yes, it does.
>>
>> Kevin
>>
>> --
>> Kevin E. Thorpe
>> Head of Biostatistics, Applied Health Research Centre (AHRC)
>> Li Ka Shing Knowledge Institute of St. Michael’s Hospital
>> Assistant Professor, Dalla Lana School of Public Health
>> University of Toronto
>> email: kevin.tho...@utoronto.ca Tel: 416.864.5776 Fax: 416.864.3016
>>
>>> On Feb 6, 2023, at 3:56 PM, Duncan Murdoch <murdoch.dun...@gmail.com> wrote:
>>>
>>> On 06/02/2023 3:47 p.m., Kevin Thorpe wrote:
>>>> Simon,
>>>> Preview is my default viewer. In the finder window that came up I tried
>>>> selecting Preview as the viewer to use and it still failed. The following
>>>> errors went to the Console.
>>>> 2023-02-06 15:43:55.448 R[62964:5174302] +[CATransaction synchronize]
>>>> called within transaction
>>>> 2023-02-06 15:43:55.568 R[62964:5174302] +[CATransaction synchronize]
>>>> called within transaction
>>>> 2023-02-06 15:44:03.253 R[62964:5174302] +[CATransaction synchronize]
>>>> called within transaction
>>>> 2023-02-06 15:44:16.012 R[62964:5174302] +[CATransaction synchronize]
>>>> called within transaction
>>>> Kevin
>>>
>>> Hi Kevin.
>>>
>>> If you just run `open some.pdf` in a terminal, does it open properly in
>>> Preview?
>>>
>>> Duncan Murdoch
>>
>
>
>
>
> ------------------------------
>
> Message: 4
> Date: Mon, 6 Feb 2023 23:01:19 +0000
> From: Kevin Thorpe <kevin.tho...@utoronto.ca>
> To: Simon Urbanek <simon.urba...@r-project.org>
> Cc: Duncan Murdoch <murdoch.dun...@gmail.com>,
> "r-sig-mac@r-project.org" <r-sig-mac@r-project.org>
> Subject: Re: [R-SIG-Mac] Cannot open PDF Vignettes on Ventura
> Message-ID: <043e8348-fc53-4bf0-977d-05633fec4...@utoronto.ca>
> Content-Type: text/plain; charset="utf-8"
>
> When I try to open a PDF vignette (say a vignette from the survival
> package)from the help system in R it does not open Preview. I cannot actually
> open any PDF vignettes. All I get is a finder window with the error I
> previously described. It asks me to select an appropriate viewer. Selecting
> Preview opens nothing and more errors are thrown to the Console. I could send
> you and Duncan screenshots off-list, since I know that theses lists are picky
> about attachments.
>
> The steps I take are:
>
> 1. Open the R app.
> 2. Start the Help system.
> 3. Navigate to the survival package vignettes.
> 4. Click the PDF link for the The survival package
>
> Then the errors happen.
>
> I will send a screenshot of the result off list.
>
> Kevin
>
> --
> Kevin E. Thorpe
> Head of Biostatistics, Applied Health Research Centre (AHRC)
> Li Ka Shing Knowledge Institute of St. Michael’s Hospital
> Assistant Professor, Dalla Lana School of Public Health
> University of Toronto
> email: kevin.tho...@utoronto.ca Tel: 416.864.5776 Fax: 416.864.3016
>
>> On Feb 6, 2023, at 4:58 PM, Simon Urbanek <simon.urba...@r-project.org>
>> wrote:
>>
>> Kevin,
>>
>> can you then describe in more detail what you are taking about? If you open
>> a PDF vignette in R, it simply calls "open" so it will open in Preview (as
>> that is your system viewer). And you have confirmed that it is what happens,
>> so are you taking about something else? If so, please describe every step
>> you make to reproduce whatever issue you are having.
>>
>> Thanks,
>> Simon
>>
>>
>> On Feb 7, 2023, at 9:58 AM, Kevin Thorpe <kevin.tho...@utoronto.ca> wrote:
>>>
>>> Yes, it does.
>>>
>>> Kevin
>>>
>>> --
>>> Kevin E. Thorpe
>>> Head of Biostatistics, Applied Health Research Centre (AHRC)
>>> Li Ka Shing Knowledge Institute of St. Michael’s Hospital
>>> Assistant Professor, Dalla Lana School of Public Health
>>> University of Toronto
>>> email: kevin.tho...@utoronto.ca Tel: 416.864.5776 Fax: 416.864.3016
>>>
>>>> On Feb 6, 2023, at 3:56 PM, Duncan Murdoch <murdoch.dun...@gmail.com>
>>>> wrote:
>>>>
>>>> On 06/02/2023 3:47 p.m., Kevin Thorpe wrote:
>>>>> Simon,
>>>>> Preview is my default viewer. In the finder window that came up I tried
>>>>> selecting Preview as the viewer to use and it still failed. The following
>>>>> errors went to the Console.
>>>>> 2023-02-06 15:43:55.448 R[62964:5174302] +[CATransaction synchronize]
>>>>> called within transaction
>>>>> 2023-02-06 15:43:55.568 R[62964:5174302] +[CATransaction synchronize]
>>>>> called within transaction
>>>>> 2023-02-06 15:44:03.253 R[62964:5174302] +[CATransaction synchronize]
>>>>> called within transaction
>>>>> 2023-02-06 15:44:16.012 R[62964:5174302] +[CATransaction synchronize]
>>>>> called within transaction
>>>>> Kevin
>>>>
>>>> Hi Kevin.
>>>>
>>>> If you just run `open some.pdf` in a terminal, does it open properly in
>>>> Preview?
>>>>
>>>> Duncan Murdoch
>>>
>>
>
>
>
> ------------------------------
>
> Subject: Digest Footer
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