Dear José,
> On Nov 25, 2019, at 10:17 AM, Jose G Conde Santiago <jose.con...@upr.edu>
> wrote:
>
> Dear John,
>
> To keep the session as simple as possible, this time I did not configure R
> Commander to send the output to the R console.
>
> This is what I did.
>
> 1. Load the file/workspace using R Commander.
What does this mean? What is a "file/workspace"? How did you "load" it with the
R Commander? Can you share the "file/workspace" so that I can replicate what
you did?
>
> 2. Read the data set using R Commander’s “Data set” button.
As I said in my earlier response, the R Commander's "Data set" button doesn't
"read" a data set -- it chooses from among data frames currently in the user's
R workspace.
>
> 3. View the data set using R Commander’s “View data set button”.
>
> 4. Close the “View data set” window.
>
> 5. Try to read the same data set using R Commander’s “Data set” button.
>
> This is the error message I got today. It was displayed in the R Console, not
> in the R Commander output window .
>
>> Error in structure(.External(.C_dotTcl, ...), class = "tclObj") :
>> [tcl] bad window path name ".3".
>
>
>
> Additional information:
>
> I tried to “Refresh the active data set” from the “Data” -> “Active Data
> set” menu, and got the same error message, but with a different number at the
> end.
>
>> Error in structure(.External(.C_dotTcl, ...), class = "tclObj") :
>> [tcl] bad window path name ".6".
>
>
> I saved the file with a different name, but when I tried to read the file
> with the new name I got a similar error message.
Do you really mean a *file* -- that is stored on your computer's file system --
or a data frame in the R workspace?
In either case, if you can share the file or data frame, creating a
reproducible example, I'd be much more likely to be able to figure out what's
happening.
Best,
John
>
>> Error in structure(.External(.C_dotTcl, ...), class = "tclObj") :
>> [tcl] bad window path name ".6".
>
>
> Thanks for your time.
>
> José
>
>
> José G. Conde, MD, MPH
> Catedrático
> Escuela de Medicina
> Recinto de Ciencias Médicas
> Universidad de Puerto Rico
>
> Tel (787) 763-9401 Fax (787) 758-5206
>
> Correo electrónico: jose.con...@upr.edu
>
>> On Nov 23, 2019, at 2:44 PM, Fox, John <j...@mcmaster.ca> wrote:
>>
>> Dear José,
>>
>> Please keep the discussion on the r-sig-mac list rather than replying only
>> to me, so that other potentially interested individuals can follow it. I'm
>> therefore cc'ing this response to the list.
>>
>>> On Nov 22, 2019, at 9:43 PM, Jose G Conde Santiago <jose.con...@upr.edu>
>>> wrote:
>>>
>>> Thanks for your prompt reply, John.
>>>
>>> I clicked on the "Data set" button to read an R dataset. Then I clicked on
>>> the "View data set" button to view it, and closed the view window. I tried
>>> to read the same file again, and that is where I get the error message.
>>
>> That's different from what I understood. When you use the "Data set" button
>> in the Rcmdr toolbar you can choose among data sets that have *already* been
>> read into the workspace, assuming that there are more than one.
>>
>> I still can't duplicate the problem that you report. I can repeatedly select
>> a data set using the button, and each time it becomes the active data set
>> and the data viewer window is refreshed.
>>
>>> I had the same issue when I tested with R Commander and R, without RStudio.
>>
>> Yes, I saw that and I can't duplicate the problem in either context.
>>
>> Best,
>> John
>>
>>>
>>> I will check again on Monday with the file you used.
>>>
>>> Best,
>>>
>>> José
>>>
>>> On Fri, Nov 22, 2019, 6:04 PM Fox, John <j...@mcmaster.ca> wrote:
>>> Dear Jose,
>>>
>>> I'm afraid that I can't duplicate this problem. I tried with the current
>>> CRAN version of the Rcmdr under RStudio, reading a text file repeatedly
>>> into the same data set. My session info is
>>>
>>> --------- snip ---------
>>>
>>>> sessionInfo()
>>> R version 3.6.1 (2019-07-05)
>>> Platform: x86_64-apple-darwin15.6.0 (64-bit)
>>> Running under: macOS Catalina 10.15.1
>>>
>>> Matrix products: default
>>> BLAS:
>>> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
>>> LAPACK:
>>> /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib
>>>
>>> locale:
>>> [1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
>>>
>>> attached base packages:
>>> [1] splines stats graphics grDevices utils datasets methods
>>> [8] base
>>>
>>> other attached packages:
>>> [1] Rcmdr_2.6-1 effects_4.1-4 RcmdrMisc_2.5-1 sandwich_2.5-1
>>> [5] car_3.0-5 carData_3.0-3
>>>
>>> loaded via a namespace (and not attached):
>>> [1] Formula_1.2-3 assertthat_0.2.1 latticeExtra_0.6-28
>>> [4] cellranger_1.1.0 pillar_1.4.2 backports_1.1.5
>>> [7] lattice_0.20-38 glue_1.3.1 digest_0.6.22
>>> [10] RColorBrewer_1.1-2 checkmate_1.9.4 minqa_1.2.4
>>> [13] colorspace_1.4-1 htmltools_0.4.0 Matrix_1.2-17
>>> [16] survey_3.36 pkgconfig_2.0.3 haven_2.2.0
>>> [19] purrr_0.3.3 scales_1.0.0 openxlsx_4.1.3
>>> [22] rio_0.5.16 lme4_1.1-21 htmlTable_1.13.2
>>> [25] tibble_2.1.3 relimp_1.0-5 ggplot2_3.2.1
>>> [28] nnet_7.3-12 lazyeval_0.2.2 survival_3.1-7
>>> [31] magrittr_1.5 crayon_1.3.4 readxl_1.3.1
>>> [34] nlme_3.1-142 MASS_7.3-51.4 forcats_0.4.0
>>> [37] foreign_0.8-72 class_7.3-15 tools_3.6.1
>>> [40] data.table_1.12.6 hms_0.5.2 mitools_2.4
>>> [43] tcltk2_1.2-11 stringr_1.4.0 munsell_0.5.0
>>> [46] cluster_2.1.0 zip_2.0.4 compiler_3.6.1
>>> [49] e1071_1.7-2 rlang_0.4.1 grid_3.6.1
>>> [52] nloptr_1.2.1 rstudioapi_0.10 htmlwidgets_1.5.1
>>> [55] tcltk_3.6.1 base64enc_0.1-3 boot_1.3-23
>>> [58] gtable_0.3.0 abind_1.4-5 DBI_1.0.0
>>> [61] curl_4.2 R6_2.4.0 gridExtra_2.3
>>> [64] zoo_1.8-6 knitr_1.25 dplyr_0.8.3
>>> [67] zeallot_0.1.0 nortest_1.0-4 Hmisc_4.3-0
>>> [70] stringi_1.4.3 Rcpp_1.0.3 vctrs_0.2.0
>>> [73] rpart_4.1-15 acepack_1.4.1 tidyselect_0.2.5
>>> [76] xfun_0.10
>>>
>>> --------- snip ---------
>>>
>>> The output that the Rcmdr generates each time in the RStudio console is
>>>
>>> Rcmdr> Duncan <-
>>> Rcmdr+
>>> read.table("/Users/johnfox/Documents/Courses/2017-2018/ICPSR/Lectures/Duncan.txt",
>>> Rcmdr+ header=TRUE, sep="", na.strings="NA", dec=".", strip.white=TRUE)
>>> RcmdrMsg: [3] NOTE: The dataset Duncan has 45 rows and 4 columns.
>>>
>>> Of course, there's a warning each time that Duncan will be overwritten, and
>>> the dataset in the viewer is automatically refreshed. That is, AFAICS
>>> everything works as it should.
>>>
>>> You can find the data file I used at
>>> <https://socialsciences.mcmaster.ca/jfox/Books/RCommander/Duncan.txt>.
>>>
>>> Can you elaborate what you did and ideally create a reproducible example of
>>> the problem?
>>>
>>> Best,
>>> John
>>>
>>> -----------------------------
>>> John Fox, Professor Emeritus
>>> McMaster University
>>> Hamilton, Ontario, Canada
>>> Web: http::/socserv.mcmaster.ca/jfox
>>>
>>>> On Nov 22, 2019, at 2:23 PM, Jose G Conde Santiago via R-SIG-Mac
>>>> <r-sig-mac@r-project.org> wrote:
>>>>
>>>> Hi,
>>>>
>>>> I am using R Commander in combination with RStudio. I configured RStudio
>>>> to display the output on the RStudio console.
>>>>
>>>> If I open a file in R Commander, then view the data file in R Commander
>>>> and then try to read the same file again using R Commander, the following
>>>> error message is displayed in the console and I cannot read the file with
>>>> R Commander:
>>>>
>>>>> Error in structure(.External(.C_dotTcl, ...), class = "tclObj") :
>>>>> [tcl] bad window path name “.29”.
>>>>
>>>> The message is always the same, except that the number at the end changes.
>>>> Here are a few more examples:
>>>>
>>>>> Error in structure(.External(.C_dotTcl, ...), class = "tclObj") :
>>>>> [tcl] bad window path name ".35".
>>>>
>>>>> Error in structure(.External(.C_dotTcl, ...), class = "tclObj") :
>>>>> [tcl] bad window path name ".51".
>>>>
>>>>> Error in structure(.External(.C_dotTcl, ...), class = "tclObj") :
>>>>> [tcl] bad window path name ".56".
>>>>
>>>>
>>>> Initially, I thought there could be a problem between R Commander and
>>>> RStudio, but I got the same error message under the same conditions when I
>>>> tested using R Commander with R alone (without RStudio).
>>>>
>>>> The files seem to be fine, since I can access them directly with R or with
>>>> RStudio.
>>>>
>>>> My computer is an iMac (27-inch, late 2012)
>>>> MacOS High Sierra version 10.13.6.
>>>> R version 3.6.1
>>>> RStudio version 1.2.5001
>>>> R Commander version 2.6-0
>>>> XQuartz 2.7.11
>>>>
>>>> Thanks.
>>>>
>>>> José
>>>>
>>>> José G. Conde, MD, MPH
>>>> Professor, School of Medicine
>>>> Medical Sciences Campus
>>>> University of Puerto Rico
>>>>
>>>> Tel (787) 763-9401 Fax (787) 758-5206
>>>>
>>>> Email: jose.con...@upr.edu
>>>>
>>>> _______________________________________________
>>>> R-SIG-Mac mailing list
>>>> R-SIG-Mac@r-project.org
>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>
>>
>
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