. onwards,
> there are no commands written into the log file for the sculpting
> functions. Pressing the "Sculpt" button in the PyMOLX11Hybrid does not
> lead to a command I can see in the log file.
> What would be the Python code to start the sculpt process?
>
> A
there was a bug in the script, sorry. Corrected script attached.
Cheers,
Thomas
On Thu, Mar 24, 2011 at 8:40 AM, Thomas Holder
wrote:
> Hi Martin,
>
> I have a script that does almost exactly what you want (I guess). See
> attachment.
>
> Cheers,
> Thomas
--
. Of course, I can
> register the function in the pymol module (uncomment the setattr
> line), but I don't think it's proper meddling with established modules
> like that. Does anyone know a better/cleaner solution?
>
> In addition, does anyone know how to suppress the GUI stuf
k),(mi,mj,mk) in zip(x,xm))
> # Second part of the sum under the sqrt
> mm=sum((sum(i)/tmass)**2 for i in zip(*xm))
> # Radius of gyration
> rg=math.sqrt(rr/tmass-mm)
> # Print it...
> print "Radius of gyration:", rg
> return rg
>
> cmd.extend(&q
pt in the wiki so it should work with older python now. Can you
download again and try?
Cheers,
Thomas
On Tue, Apr 5, 2011 at 8:49 PM, Anastassis Perrakis wrote:
> Hi -
>
> I am trying to use the script by Thomas Holder, Spectrumany
>
> http://www.pymolwiki.org/index.php/Spectruma
Jason Vertrees wrote, On 04/08/11 20:09:
> Hi Matthias,
>
> There is no script that I'm aware of, but writing one should be rather
> straightforward because of how the API is organized:
>
> commandName arg1, arg2, arg3
>
> becomes
>
> cmd.commandName(arg1, arg2, arg3)
I would use the cmd.keywo
y-working script attached, have fun!
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
'''
http://sourceforge.net/mailarchive/message.php?msg_id=27331786
Subject: [PyMOL] Convert pml script to Pymol Python script
Date: Fri, 8 Apr 2011 1
it's on the wiki now:
http://pymolwiki.org/index.php/Pml2py
Cheers,
Thomas
Thomas Holder wrote, On 04/09/11 11:17:
> Michael Lerner wrote, On 04/08/11 20:16:
>> It's not elegant at all, but it's worth knowing that you can use
>> cmd.do("...") as a qui
d reads the output using BioPython. It then makes several
> selections, each for a kind of secondary structure elements (SSE) if
> there is at least one residue in the input selection is assigned with
> the SSE.
>
> regards,
> hongbo
--
Thomas Holder
MPI for Development
or-Error: Malformed selection.
> ( ( name ca+C1*+C1' and ( byres ( b )<--
>
> how to fix it?
>
> I want to know how label dna residues by command line?
>
> please guide me.
>
> best wishes
>
> --
>
> Leila Karami
> Ph.D. student of Physical Chemistry
Hi Leila,
> I want to know how to change color of dashed line. (color of dashed line
> is yellow by default).
it's the dash_color setting, so to make them blue for example type:
set dash_color, blue
http://www.pymolwiki.org/index.php/Dash_color
Cheers,
Thomas
--
Thomas Hol
pages will help:
http://pymolwiki.org/index.php/Launching_From_a_Script
http://pymolwiki.org/index.php/Python_Integration
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
--
WhatsUp Gold - Download Free Network Management
/Chrystallographers who know how to do this.
> As an example, when downloading the PDB file of "1AVD", I get a file
> with two chains. The biological assembly would be a tetramer, so I
> wonder what URL I would require to write into a script that does the
> downloading.
>
( (60-j)/60.0 ) )
> --
>
>
> And various other combinations, but none seem to produce the result that
> I desire. Can anyone help me with the scripting as my python knowledge
> is very basic.
>
> Thanks
> Sena
--
Thomas Holder
MPI for Developmental Biology
Spemanns
builds want to include it.
>
> Cheers,
>
> -Michael
>
> --
> Michael Lerner, Ph.D.
> IRTA Postdoctoral Fellow
> Laboratory of Computational Biology NIH/NHLBI
> 5635 Fishers Lane, Room T909, MSC 9314
> Rockvi
> In one instance, the "C" residue name is left justified and right
> justified in the other.
> Of course, this cannot happen for the three letter residue names.
> Any clue ?
>
> I tried the following :
>
> *pdb_truncate_residue_name* (boolean, default: off) controls
On 05/18/2011 02:23 PM, Pascal Auffinger wrote:
> Thanks for confirmation.
>
> Any clues on how to fix this ???
it has to be fixed in the C-code. I guess it's CoordSetAtomToPDBStrVLA
in layer2/CoordSet.c
Cheers,
Thomas
--
Thomas Holder
MPI for Develop
rsion.
see attached patch (untested, since my build seems to be broken at the
moment).
This an
important bug (at least for me). I and many others on the list don't
master C languages (oups ... Am i the only one ?)
for sure you're not the only one ;-)
Cheers,
Thomas
--
Thomas
=3304003&group_id=4546&atid=104546
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
--
What Every C/C++ and Fortran developer Should Know!
Read this article and learn how Intel has extend
rg/index.php/Mset
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
--
What Every C/C++ and Fortran developer Should Know!
Read this article and learn how Intel has extended the reach of its
next-generat
anks,
Claudia
Claudia Scotti
Dipartimento di Medicina Sperimentale
Sezione di Patologia Generale
Universita' di Pavia
Via Ferrata, 1
27100 Pavia
Italia
Tel. 0039 0382 986335/8/1
Facs 0039 0382 303673
--
Thomas Holder
MPI for Developmental Biology
show_bumps.py
Description: application/chimera
--
e on my blog <http://qmviews.blogspot.com/>. If I cant
> come up with a PyMOL solution, then I guess I'll just try to find a
> Python solution.
>
> Thanks for any hints on this.
--
Thomas Holder
MPI for Developmental Biology
use that one! (this could be improved I guess).
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
--
EditLive Enterprise is the world's most technically advanced content
authoring tool. Experience the pow
ct containing the first atom is moved [and rotated]
so as to form an approximately resonable bond with the second, and is
then merged with the first object."
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
-
rns atom pairs with (model,index) keys.
pairlist = polarpairs("exp_interest", "exp_interest", cutoff=3.6, \
name="interest_polar_conts")
You can drop the 'name' argument if you don't need the object for visual
inspection but only the pair
ra
Cheers,
Thomas
jp d wrote, On 06/24/11 22:57:
> hi,
> is there a way in pymol/python scripts to
> determine what the next or previous resi would be?
>
> it needs to handle insertions and deletions
>
> thanks
> jpd
--
Thomas Holder
MPI for Developmental Biolo
calculates the consensus secondary structure over all states. You
may produce distorted intermediates with g_morph, so that consensus
might not be appropriate. To only consider first and last state, do this:
dss movie, state=-4
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biolog
Hi pymolers,
I wrote a script to use a personal plugin directory.
http://pymolwiki.org/index.php/PluginDirectory
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
--
All of the data generated in your
]]
Cheers,
Thomas
Matthias Schmidt wrote, On 07/09/11 22:32:
> Hi,
>
> I made a nice movie and it's fine and I would just like to delete a
> part of it or to insert some frames. How is that possible? Mset resets
> the whole movie and mview does not seem to do what I wo
y overlap?
See Tsjerk's reply.
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
--
All of the data generated in your IT infrastructure is seriously valuable.
Why? It contains a definitive record o
view[12:15] + [1.]
cmd.transform_selection('(all)', M, transpose=1)
cmd.set_view([1,0,0,0,1,0,0,0,1] + view[9:])
cmd.extend('transform_by_camera_rotation', transform_by_camera_rotation)
Example:
fetch 2xwu
orient
transform_by_camera_rotation
save /tmp/withneworientation.pdb
Cheer
" to run python scripts. Or type into the command line:
run transform_by_camera_rotation.py
After that, PyMOL knows the transform_by_camera_rotation command.
For more details see:
http://pymolwiki.org/index.php/Run
http://pymolwiki.org/index.php/Running_Scripts
C
from numpy import identity, matrix
R = identity(4)
T = identity(4)
R[0:3,0:3] = M[0:3,0:3]
T[0:3,3] = t
# should print two times the same matrix
print M
print matrix(T) * matrix(R) * matrix(T).I
Hope that helps.
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 3
.
run transform_by_camera_rotation.py# run the script
transform_by_camera_rotation # call the new command
save /tmp/withneworientation.pdb # save the file
Is that clear?
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental B
-6103-77-1255
--
Thomas Holder
MPI for Developmental Biology
distancecoloring.py
Description: application/chimera
--
Got Input? Slashdot Needs You.
Take our quick survey online. Come on, we don't ask for help often.
directory) so far only recognizes single python files
(this will most likely change in the future).
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
--
Got Input? Slashdot
ate and rotate commands:
http://www.pymolwiki.org/index.php/Modeling_and_Editing_Structures#Translate_or_rotate_individual_objects
If this is not precise enough for you and you want real beta-sheet
modeling, you should use something like modeller.
Cheers,
Thomas
--
Thomas Holder
MP
is example) when hit the
> submit button.
--
Thomas Holder
MPI for Developmental Biology
--
BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA
The must-attend event for mobile developers. Connect with experts.
t figured out how to combine them in the
> right way.
> It would be great if the residues could be saved by increasing residue
> number, something like
> res-a001
> res-f002
> where 'a' and '
> correctly. There isn't any traceback or error reported on the console.
>
> Do you have experienced similar problems ?
I can confirm that DynoPlot does not work. This needs to be fixed.
Cheers,
Thomas
--
Thom
).
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
--
uberSVN's rich system and user administration capabilities and model
configuration take the hassle out of deploying and managing Subversion an
ecognize the helix but it
> do not work.
are you sure? What happens if you try this:
alter all, ss='H'
as cartoon
rebuild
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
--
olvated system> 100.000 atoms I have problems with water
>> molecules. Is it possible to handle gro files with more than 100.000 atoms
>> and residues?
>> Best
--
Thomas Holder
MPI for Developmental Biology
--
on.
>
> Cheers,
>
> Tsjerk
>
> On Mon, Aug 29, 2011 at 8:43 AM, Suda Ravindran wrote:
>> Hi,
>>
>> I would like to know how to do structure based superposition using PyMol for
>> 3 or more structures. Please help me out.
>>
>> Thanks,
>>
&g
om 1-10 and then from 10-1.
As far as I know there is no "movie_back_and_forward" setting. You need
to map states to frames with mset:
mset 1-10 10-1
mplay
http://pymolwiki.org/index.php/Mset
http://pymolwiki.org/index.php/MovieSchool_2#Terminology
Cheers,
Thomas
--
Thomas Holder
aller) angle between the two normals of the planes defined by x1, x2,
> x3 and x2, x3, x4, respectively. For some odd reason the measurment
> wizard in my PyMOL install does not display torsion angles..!?
>
> Kind regards and thanks for any feedback.
> Martin
--
Thomas Holder
MP
d() without arguments does.
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
--
Special Offer -- Download ArcSight Logger for FREE!
Finally, a world-class log management solution
.
If the two structures have the same sequence (same atom identifiers) and
you don't need an "alignment", you can use rms_cur.
http://pymolwiki.org/index.php/Rms_Cur
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
--
hydrogen -- only add all hydrogen,
>
> thanks for any suggestions,
--
Thomas Holder
MPI for Developmental Biology
--
Special Offer -- Download ArcSight Logger for FREE!
Finally, a world-class log management solution at
be the problem?
>
> I have tried using the log function + mutagenesis wizard in Pymol GUI
> but something strange is happening. The position 36:B did changed to His
> but
>
> e.g.
>
> input file - 1shr.pdb -> atom number for 36:B:CA is 1334
> output file - kill.pdb -> at
On 09/06/2011 03:43 PM, Thomas Holder wrote:
> Try this:
> cmd.save("kill.pdb", test)
sorry, forgot quotes, must be:
cmd.save("kill.pdb", "test")
--
Thomas Holder
MPI for Developmental Biology
2, name C12, name O4
Hope that helps,
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
--
Special Offer -- Download ArcSight Logger for FREE!
Finally, a world-class log management solution at an even bet
selections,
> here I got two.
>
> Thanks for any suggestions,
>
> --
> Best Regards,
>
> lina
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
--
Malware Security
and more examples see:
http://pymolwiki.org/index.php/Color
http://pymolwiki.org/index.php/Util.mroll
http://pymolwiki.org/index.php/Property_Selectors
http://pymolwiki.org/index.php/Selection_Algebra
Cheers,
Thomas
--
Thomas Hold
> You have to make .pml file and put the python commands inside pymol
> blocks.
it's "python" blocks, see:
http://pymolwiki.org/index.php/Python
> ... do I need to put those code in another .py file?
That's also possible, yes.
Cheers,
Thomas
--
Thomas Holder
tructure. I
> tried in coot to superimposed two structures then save the moved
> molecules, but the space group changed to the target structures. I also
> tried the matrix_copy command with failure.
>
> Does anyone know how to do this? Thanks in advance.
>
> Best,
> Shukun
--
Tho
used the "Matrix_copy" command? I upgraded pymol to the
> version of 1.4.1, .
yes, the matrix_copy command was introduced after 0.99!
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
--
BlackBe
all except obj1 I write:
> delete not obj1
> but this expression does not works as expected...
>
> Is there a way in pymol to delete all except [something]?
> In selections these experssions work. But in object names they don't.
>
>
>
db in the display immediately after loading it and before "do
> lot more" is executed?
>
> Best,
>
> Matthias
> --
> Structural Bioinformatics and Computational Biochemistry Unit
> Dept. of Biochemi
eck one by one,
and run dssp and update ...
Thanks for any advice,
--
Best Regards,
lina
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
'''
(c) 2010 Thomas Holder, Max Planck Institute for Developmental Biology
PyMOL wrapper for DSSP and STRIDE
'&#
ror: [Errno 2] No such file or directory
does /home/lina/dssp point to your dssp executable?
Cheers,
Thomas
PS: I just realized that there is a new dssp-2 and it does not
understand the -na option, thus will fail with my script without
modifying it.
--
Thomas Holder
MPI for Developmental Biol
>
> Thanks,
>
> --
> Best Regards,
>
> lina
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
--
BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA
Lea
Hi Lina,
> Another question here,
>
> can I show the whole residue as a ball, and different residues connect
> by (virtual) bonds.
combine ribbon and CA spheres:
hide everything
show ribbon
show spheres, name CA
set sphere_scale, 0.5
set ribbon_width, 5
Cheers,
Thomas
--
T
,
Thomas
Thomas Holder wrote, On 08/16/11 15:51:
> On 08/16/2011 03:16 PM, Joseph André wrote:
>> Hi everybody,
>>
>> I want to build an interactive plot I tried to use and tweak dynoplot
>> but DynoPlot doesn't work properly : I can display the Tk window but
>&
olwiki.org/index.php/Zoom
Cheers,
Thomas
On 09/21/2011 04:47 PM, lina wrote:
> Hi,
>
> I tried to zoom in, make it large,
>
> but seems not work, neither,
> zoom
> zoom complete 1 or 0
> zoom center
>
> Thanks for some suggestions,
>
> --
> Best Regards
I can to do this using the pymol GUI but I would prefer that
> the script :
>
> - shows the selected water molecules as a sphere
> - and writes the results in a file with the water ID (i.e. residue
> number), for e
5)
# zone 2
select ZONE2, byres (ligand around 9.0) and not ZONE1
# save to files
save zone1.pdb, ZONE1
save zone2.pdb, ZONE2
Have a look at
http://pymolwiki.org/index.php/Selection_Algebra
Cheers,
Thomas
--
Thomas Hold
rs
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
--
All of the data generated in your IT infrastructure is seriously valuable.
Why? It contains a definitive record of a
ession!
More details and examples:
http://pymolwiki.org/index.php/Alter
Cheers,
Thomas
On 09/27/2011 09:35 AM, lina wrote:
> Hi,
>
> how can I change the atom such as
>
> H01 to H22 in command
>
> Thanks ahead,
>
> --
> Best Regards,
&g
Dear PyMOL users,
I don't know how many cavers are in this audience, but if you are
curious what PyMOL can be used for apart from displaying molecules, have
a look at the post below!
Cheers,
Thomas
Original Message
Subject: Rendering 3D Surveys with Pymol
Date: Wed, 5 Oct
chain of the protein by
> 60,120,180,240 degrees each.
> Is there a script in PyMol that can do that?
>
> Best,
> Kanika
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
---
h purple cloud effect?
>
> Thanks for any hint.
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
--
All the data continuously generated in your IT infrastructure contains a
def
H
>> ATOM823 C12 PDB 1 34.140 35.147 -0.218 -0.18
>> -0.01 C
>>
>> only the last field.
>>
>> How can I quickly achieve it.
>>
>> Thanks,
--
Thomas Holder
MPI for Developmental Biology
-
>> Is there a way to stop ray_trace_mode 1 putting an outline on labels?
>> Although the outline looks quite good for the graphics, especially once they
>> are printed, it makes the text look like blocky typewriter font. Any advice
>> appreciate
pop())
> IndexError: pop from empty list
> --
>
> By referring,
> http://www.pymolwiki.org/index.php/Launching_PyMOL#Launching_PyMOL_from_an_external_application
>> If PYMOL_PATH, LD_LIBRARY_PATH, and TCL_LIBRARY are correctly defined, then
>> yo
xclock) and if you are successful, then
try the same with PyMOL.
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
--
All the data continuously generated in your IT infrastructure contains a
definitive reco
ll molecular (ligand), the ccp4 is the best way to obtain
> its electron density map?
>
> Seems those questions are not so-pymol-related, but I wish if someone
> are familiar with this, can give me some advice??
>
> Those questions might be easy, but to me at present it see
On 10/25/2011 02:27 PM, lina wrote:
> On Tue, Oct 25, 2011 at 7:56 PM, Thomas Holder
> wrote:
>> Hi Lina,
>>
>> do you already have any electron density or reflection file (*.map, *.mtz,
>> ...) or do you want to create a "fake" density from your
> And read the help for the map_new command (there is no wiki page yet):
> PyMOL>help map_new
now the wiki page is there:
http://pymolwiki.org/index.php/Map_new
Cheers,
Thomas
--
Thomas Holder
MPI for Developmenta
; secondary structure is shown correctly.
>
> How can I make Pymol show the structure of the multible states in one
> file correctly?
>
> Thanks in advance for answers!
>
> Cheers,
> Alexander
--
Thomas Holder
MPI for Developmental Biology
?
> please let me know.
>
> Thanks
> -Anasuya
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
--
The demand for IT networking professionals continues to grow, and the
demand for specialized n
e surface,A
>> turn x,90
> but i see object A turned
>> show surface,A
>> scene=002,store
>> mview store,scene=002
> mplay
>
> and i see both objects to rotate 90 degrees with respect to their-axis.
> How can i solve this problem?
>
> Guridis Georgios
>
ctory, and users would get these corrections.
>
> I dont know if the pymol wiki could fetch and display the scripts from
> the subversion folder.
>
> How does this idea sounds?
>
> Bes
> Troels
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübing
cartoon_ring_finder, 4
set cartoon_ring_mode, 3
as cartoon
It's a bit hidden in the PyMOLWiki:
http://pymolwiki.org/index.php/Examples_of_nucleic_acid_cartoons#Cartoon_ring_finder
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
tructure
hm, shouldn't it be the other way round? FOR is N-terminus and ETA is
C-terminus?
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
--
RSA
; somehow access the function for calculating this value directly from the
> pymol prompt without aligning?
>
> Thanks for hints
> Martin
--
Thomas Holder
MPI for Developmental Biology
---
n plot
>
> 2- I'd like to make such measurements for the enssemble of the pdb
> structures and plot on the ramachandran map values for each structure (
> by points or other markers)
>
> Finaly could you show me some tutorials wich could help me working with
>
) for my enssemble. How I could
mark Chi-1 angle for all my structures and plot in on Rama map?
I don't know of any easy solution to that, sorry. Maybe someone else?
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
DynoPlot.py
De
.get(ss, self.mark)
I just updated the PyMOLWiki page with the modifications (but markers by
secondary structure are disabled by default to not change the previous
behaviour).
http://pymolwiki.org/index.php/DynoPlot
Cheers,
Thomas
--
Thomas Holder
MPI for Deve
eatures from
> outside of PyMOL? An example, the below is a script (inspired by Thomas
> Holder) which saves down to disk all amino acids of a protein structure
> into separate PDB files.
>
> # *
> from pymol
ld use the
> > combination of the structure alignment ( like CEalign) with
> the common seq.
> > alignment but I dont know exactly how :(
>
> You should use the 'cealign' or 'super' commands to do this. Cealign
> uses on
t pymol
>
>
> What could be the problem? Could it be that the 'pymol/pymol_path' call
> is not exactly right? In the modules/pymol directory, there is a module
> 'pymol/launch_pymol', but I have a similar error ("No module named
> _cmd") when I try to
> Thanking you in advance...
> Hena
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
--
All the data continuously generated in your IT infrastructure
contains a definitive record of customers, a
both torsion angles ?
>
> Also I'd like to know is there any module for pymol wich could be used
> for obtaining linear unfolded structure for the defined sequence or
> folded protein ( in pdb) ?
>
> Thanks,
>
>
> James
--
use. Or, prior to clicking the "Ace" button type this:
edit first (name N)
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
--
All the data continuously gener
in protein-ligand complex ( beetwenn
> specified ligand groups as well as some amino acid residues of the
> ligand binding pocket)
just like before, but with ligand as selection 1 and receptor as
selection 2.
Hope that helps.
Cheers,
Tho
rom those
> residues.
>
> Thanks,
>
> James
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
--
All the data continuously generated in your IT infrastructure
contains a definiti
ting the RMSD over the remaining matches.
>
> Cheers,
>
> Tsjerk
>
> On Wed, Nov 30, 2011 at 11:05 AM, Martin Hediger wrote:
>> How does PyMOL calculate the RMSD between two structures where the
>> number of atoms is different?
>> Martin
--
Thomas Holder
MPI
a36
>>>>> Referring the following, I'm trying to install PyMOL 1.4.1 with
>>>>> attached 'compile_pymol.sh', but no success. Would you please help to
>>>>> finish installation, or give me some advices? If information
>>>>> ina
can we have frames around code blocks like before? Or am I the only one
who misses them?
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
--
All the data continuously
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