One should emphasize that this alignment is a *sequence* alignment in case of the "align" command.
Cheers, Thomas On 11/30/2011 11:19 AM, Tsjerk Wassenaar wrote: > Hi Martin, > > It does an alignment, finding matching pairs of atoms, removing > outliers and calculating the RMSD over the remaining matches. > > Cheers, > > Tsjerk > > On Wed, Nov 30, 2011 at 11:05 AM, Martin Hediger<ma....@bluewin.ch> wrote: >> How does PyMOL calculate the RMSD between two structures where the >> number of atoms is different? >> Martin -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
