Hi Amanda,
I am using the command: cmd.dist("interest_polar_conts","exp_interest","exp_interest",quiet=1,mode=2,label=1,reset=1);cmd.enable("interest_polar_conts")to find the polar contacts. This command creates an object in the panel but I cannot figure out how to print the information I am seeing, like the distance and the atoms involved, in the viewer to a file.
as far as I know the "raw data" of distance objects cannot be accessed.Have a look at the attached script, it does a very similar job to the distance command but returns atom pairs with (model,index) keys.
pairlist = polarpairs("exp_interest", "exp_interest", cutoff=3.6, \
name="interest_polar_conts")
You can drop the 'name' argument if you don't need the object for visual
inspection but only the pair list.
Cheers, Thomas -- Thomas Holder MPI for Developmental Biology
pairs.py
Description: application/chimera
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