Hi James,
check this PyMOLWiki page: http://pymolwiki.org/index.php/Fab
However, the "fab" command does not take user defined phi/psi angles,
only 4 predefined conformations ("ss" argument). User defined phi/psi
can be handled by these scripts:
http://pymolwiki.org/index.php/CreateSecondaryStructure
http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/#model
Cheers,
Thomas
James Starlight wrote, On 11/23/11 11:43:
> Dear PyMol Users!
>
> I wounder to know about possible ways of creation of the peptide
> structures via PyMol Builder module. In particular I need create a
> linear structure of my protein ( with fixed phi and psi angles) for
> futher folding molecular dynamics simulation of that peptide. But in
> builder module I found only helix and sheet conformations for each aa.
> residue. How I can specify desired values for both torsion angles ?
>
> Also I'd like to know is there any module for pymol wich could be used
> for obtaining linear unfolded structure for the defined sequence or
> folded protein ( in pdb) ?
>
> Thanks,
>
>
> James
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
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