[PyMOL] Pymol and load_traj

2013-07-14 Thread David Osguthorpe
Im wondering if this is the appropriate place for talking about pymol bugs/development - I could not find a pymol development mailing list. I was attempting to use load_traj for a trajectory and got an instant crash - this was on my OSX development version (Ive downloaded the pymol svn source wi

[PyMOL] noInvalidateMMStereoAndTextType flag

2014-03-21 Thread David Osguthorpe
Does anybody have a clue what this flag (noInvalidateMMStereoAndTextType) is doing? I was using openbabel to minimize a molecule and trying to figure out how it was parameterising some nitrogens (sp2/sp3 for nitrogens is always a problem as they both have 3 bonds) (mmff94). I wrote out the mol

Re: [PyMOL] noInvalidateMMStereoAndTextType flag

2014-03-23 Thread David Osguthorpe
On Sun, Mar 23, 2014 at 06:02:32PM -0400, Thomas Holder wrote: > Hi David, > > very well analyzed. You are right that noInvalidateMMStereoAndTextType should > never be set to 0 in the open-source version, we will fix that. > > FYI: The incentive version of PyMOL can use a proprietary Schrödinger

Re: [PyMOL] noInvalidateMMStereoAndTextType flag

2014-03-24 Thread David Osguthorpe
On Mon, Mar 24, 2014 at 05:46:15AM -0400, David Hall wrote: > Not sure if the git svn stopping at rev 3938 was a question, but maybe you > are using the old svn URL? > > svn://svn.code.sf.net/p/pymol/code/ > Sorry - I was unclear - I did not mean the revisions stopped there just that I observe