Dear PyMol Users!
I wounder to know about possible ways of creation of the peptide structures
via PyMol Builder module. In particular I need create a linear structure of
my protein ( with fixed phi and psi angles) for futher folding molecular
dynamics simulation of that peptide. But in builder mod
Hi James,
check this PyMOLWiki page: http://pymolwiki.org/index.php/Fab
However, the "fab" command does not take user defined phi/psi angles,
only 4 predefined conformations ("ss" argument). User defined phi/psi
can be handled by these scripts:
http://pymolwiki.org/index.php/CreateSecondaryStr
Thanks Thomas!
Those scripts works fine. Could you tell me if there any way to install all
of those scripts as the pymol plugins ( that I need not to load this
scripts every time when I sttart pymol de novo )?
James
2011/11/23 James Starlight
> Thanks thomas
>
> Those scripts works fine. Coul
By the way,
C could not find if all those scripts are able to make CAPS on the residues
but if it's not possible Iwant to add some CAP group ( e.g ACE to the N
term) via builder module. So I've chose ACE residue from that module and
obtained message
pick location to attach ace
how now i could s
On 11/23/2011 01:18 PM, James Starlight wrote:
> Thanks Thomas!
>
> Those scripts works fine. Could you tell me if there any way to install
> all of those scripts as the pymol plugins ( that I need not to load this
> scripts every time when I sttart pymol de novo )?
>
>
> James
>
Hi James
Jason V
Hi James,
> C could not find if all those scripts are able to make CAPS on the residues
>
> but if it's not possible Iwant to add some CAP group ( e.g ACE to the N
> term) via builder module. So I've chose ACE residue from that module and
> obtained message
>
> pick location to attach ace
>
>
If you are in the PyMOL Viewer and in Edit mode, you can hit
+<{a,g,d,e,...}> to build up a linear polypeptide, where the single
letters correspond to the amino acide identifiers.
Is this useful to you?
Am 23.11.11 11:43, schrieb James Starlight:
Dear PyMol Users!
I wounder to know ab
Hi Donnie,
Business decisions are off-topic for the pymol-users list, but for
openness and transparency I'll briefly respond.
> I always wonder, are there actually people who feel they gain some sort
> of competitive advantage by having access to PyMOL features first?
> Doesn't seem to make sense
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