Thanks Thomas!
Those scripts works fine. Could you tell me if there any way to install all
of those scripts as the pymol plugins ( that I need not to load this
scripts every time when I sttart pymol de novo )?
James
2011/11/23 James Starlight <jmsstarli...@gmail.com>
> Thanks thomas
>
> Those scripts works fine. Could you tell me if there any way to install
> all of those scripts as the pymol plugins ( that I need not to load this
> scripts every time when I sttart pymol de novo )?
>
>
> James
>
>
> 2011/11/23 Thomas Holder <spel...@users.sourceforge.net>
>
>> Hi James,
>>
>> check this PyMOLWiki page:
>> http://pymolwiki.org/index.**php/Fab<http://pymolwiki.org/index.php/Fab>
>>
>> However, the "fab" command does not take user defined phi/psi angles,
>> only 4 predefined conformations ("ss" argument). User defined phi/psi can
>> be handled by these scripts:
>>
>> http://pymolwiki.org/index.**php/CreateSecondaryStructure<http://pymolwiki.org/index.php/CreateSecondaryStructure>
>> http://pldserver1.biochem.**queensu.ca/~rlc/work/pymol/#**model<http://pldserver1.biochem.queensu.ca/%7Erlc/work/pymol/#model>
>>
>> Cheers,
>> Thomas
>>
>> James Starlight wrote, On 11/23/11 11:43:
>>
>> Dear PyMol Users!
>>>
>>> I wounder to know about possible ways of creation of the peptide
>>> structures via PyMol Builder module. In particular I need create a linear
>>> structure of my protein ( with fixed phi and psi angles) for futher folding
>>> molecular dynamics simulation of that peptide. But in builder module I
>>> found only helix and sheet conformations for each aa. residue. How I can
>>> specify desired values for both torsion angles ?
>>>
>>> Also I'd like to know is there any module for pymol wich could be used
>>> for obtaining linear unfolded structure for the defined sequence or folded
>>> protein ( in pdb) ?
>>>
>>> Thanks,
>>>
>>>
>>> James
>>>
>>
>> --
>> Thomas Holder
>> MPI for Developmental Biology
>> Spemannstr. 35
>> D-72076 Tübingen
>>
>
>
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