[PyMOL] Weird results with carving density maps

carve (or they carve too much because ALL the density disappears!!). Any help will be greatly appreciated!! Thanks, Kelley Dr. Kelley Moremen Professor Complex Carbohydrate Research Center (Room 3055) and Department of Biochemistry and Molecular Biology 315 Riverbend Road University of Georgi

[PyMOL] Pymol animation

ike to show the movement of a ligand or substrate into the active site of an enzyme/receptor, animate a transformation in the active site, and then animate the departure of the enzymatic product or ligand. Could somebody please help? Thanks, Kelley Dr. Kelley Moremen Professor Complex Carb

[PyMOL] Solution for the rTools-impaired

Dear Pymollers, Thanks to those of you that had suggestions for my problems getting rTools-like features in MacPymol. I wanted to let you know that I just received a perfect workaround that should probably be circulated to those that are using stand-alone Pymol for the Mac where rTools is not avai

[PyMOL] Movie scripts for the rTools-impaired

, y, and z rotations and moves and do not use Python (which I absolutely do not understand). Thanks mercifully from the programming impaired, Kelley Dr. Kelley Moremen Professor Complex Carbohydrate Research Center (Room 3055) Department of Biochemistry and Molecular Biology University of

[PyMOL] Install of Pymol 0.88 from Fink?

except Mac OS X. Thanks. Kelley Dr. Kelley Moremen Professor Complex Carbohydrate Research Center Department of Biochemistry and Molecular Biology University of Georgia, Athens, GA 30602-7229 Office (706) 542-1705Fax: (706) 542-1759 Email: more...@arches.uga.edu (send email with large

Re: [PyMOL] Movement in animations: version 2

ng approach that will work in the platforms that I have described above? Any assistance would be greatly appreciated. Regards, Kelley On 4/1/03 4:43 AM, "Kristian Rother" wrote: > Am Montag, 31. März 2003 23:18 schrieb Kelley Moremen: >> Dear Pymolers: >> >> Th

[PyMOL] Movement in animations

or a in range(55,70): cmd.mdo(a,"move x,10,object=proteinA") ^ SyntaxError: invalid syntax I have tried MANY variations on this theme and seem to be stumbling around in the dark. Any help would be greatly appreciated. Thanks, Kelley Dr. Kelley Moremen A

[PyMOL] Lighting questions: round 2

Any clues as to the appropriate syntax for altering the lighting to originate from straight above the object in the image window? Thanks, Kelley Dr. Kelley Moremen Associate Professor Complex Carbohydrate Research Center Department of Biochemistry and Molecular Biology University of Georgia

[PyMOL] Setting light direction in ray traced images

need the light to come from above rather than the front/side in order to illuminate the deep pocket. Alternatively, is there another way to illuminate the recesses of the pocket and maintain the shadow effects at the surface? Thanks, Kelley Dr. Kelley Moremen Associate Professor Complex

[PyMOL] Re: PyMOL-users digest, Vol 1 #218 - 1 msg

/02 3:06 PM, "pymol-users-requ...@lists.sourceforge.net" wrote: > --__--__-- > > Message: 1 > From: "Schubert, Carsten" > To: "'Kelley Moremen'" , > pymol-users@lists.sourceforge.net > Subject: RE: [PyMOL] Selective Z-clipping > Da

[PyMOL] Selective Z-clipping

(without any Z-clipping) are displayed. Any suggestions on how I can get selective Z-clipping Thanks, Kelley Dr. Kelley Moremen Associate Professor Complex Carbohydrate Research Center Department of Biochemistry and Molecular Biology University of Georgia, Athens, GA 30602-7229 Office (706) 542

[PyMOL] Current settings list in Pymol OSX

the settings commands (there is only a partial list in the manual) and a global list (as in the pull-down menu) is a great reminder, but alas the menu interface is not yet there in the Mac OSX version. Thanks for your help. Kelley Dr. Kelley Moremen Associate Professor Complex Carbohydrate

[PyMOL] Isomesh level units?

for the Pymol level value? Are these the units even comparable? Thanks for your assistance. Kelley Dr. Kelley Moremen Associate Professor Complex Carbohydrate Research Center Department of Biochemistry and Molecular Biology University of Georgia, Athens, GA 30602-7229 Office (706) 542-1705

[PyMOL] Secondary structure assignments

that there is a solution. -Kelley Dr. Kelley Moremen Associate Professor Complex Carbohydrate Research Center Department of Biochemistry and Molecular Biology University of Georgia, Athens, GA 30602-7229 Office (706) 542-1705Fax: (706) 542-1759 Email: more...@arches.uga.edu (send email