Not sure if u have solved this yet, but see 'cartoon skip', i think that is
what u r looking for.
Cheers
Nick
From: Gianluigi Caltabiano [chimic...@yahoo.it]
Sent: Thursday, June 06, 2013 7:50
To: James Starlight; pymol-users@lists.sourceforge.net
Subje
[responding to Folmer Fredslund, private message]
Thanks, Folmer. What I was missing was the difference between
color colorName, selection
and
set xxx_color, colorName
and
set xxx_color, colorName, selection
Each of which does something totally different internally in PyMOL. I see
now
I guess I still don't understand exactly what a scene is:
"scene" saves and restores scenes. A scene consists of the camera
view, all object activity information, all atom-wise visibilities,
all atom-wise colors, all representations, the global frame index,
and may contain a text
That would not work if you were trying to show selected individual ribbon
segments translucent, I think. Right?
>From what I can tell, here is the list of settings that you can assign a
selection. Notably missing is cartoon_transparency and ribbon_transparency.
Perhaps because a cartoon object can
You need to create a new object of the part you want transparent and then set
that cartoon as transparent (and hide the "original" cartoon for the
selection).
G.
Da: James Starlight
A: pymol-users
Inviato: Giovedì 6 Giugno 2013 12:36
Oggetto: [PyMOL] Carto
Dear PyMol users!
I want to set transparency on the selected carton region of my protein ( I
have closed GFP barell with the chromophore inside it so I'd like set
transparency of some beta-shits to make chromophore easily visible ).
In PyMol I've selected region corresponded to that Beta-sheets
