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Hello team,
As freesurfer takes lot of time for processing one subject, I was searching
on how to run recon-all for multiple subjects in parallel and I found the
following in Andy's brain book doc
https://secure-web.cisco.com/1MEMXaE4I_nNiI-Rew0Vd8aEQ
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Not sure what your container is running for Freesurfer. I would
check you are running the latest version = 7.3.2 compiled for Ubuntu 20 from,
https://secure-web.cisco.com/1HfVaiagqDrkuTglakaaQb9f9tkuN3NAisGLhceeHTxDiD0odIXl0a53to4D1tzSxi99Zu6h2l0doR
Hi Padma,
It looks like tcsh isn't installed. Can you try installing it by running
```
sudo apt update
sudo apt install tcsh
```
-Paul
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of priya padma
Sent: Wednesday, October 12, 2022 3:16 AM
To: freesur
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Hi,
I have been processing longitudinal data using the longitudinal processing
stream but for some subjects I am having getting this error when creating the
base:
Input rotation's max deviation from rotation is: 0.000258493
MyMatrix::RotationMean in
Hello,
Specifying a single volume frame with # is great, but how to specify a range or
multiple arbitrary choosen frames?
Something like #0..9 would be nice for the 1st to the 10th frame, and #0,2,4
for the 1st, 3rd and 5th frames.
Thanks for the help and
Have a very good day!
Sebastien
___
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thank you for your reply, I got the issue resolved.
On Thu, Oct 13, 2022 at 12:02 AM Wighton, Paul
wrote:
> Hi Padma,
>
> It looks like tcsh isn't installed. Can you try installing it by running
>
> ```
> sudo apt update
> sudo apt install tcsh
> ``
External Email - Use Caution
Hello Team,
I am trying to find the volume of WM, GM, CSF separately and I came
across this command namely
"mri_compute_volume_fractions"
Looking through all the email archives I gave the following line as the
command after setting the paths
$ mri_co
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Dear Freesurfer Community.
I want to do image fusion (PET+T1) = T' weighted image. Then I want to go
for the feature extraction from this T1 modality which I will get from the
fusion.So how i can go for this.
Questions are:
1) Do I have to use PET Su
