External Email - Use Caution Hello Team,
I am trying to find the volume of WM, GM, CSF separately and I came across this command namely "mri_compute_volume_fractions" Looking through all the email archives I gave the following line as the command after setting the paths $ mri_compute_volume_fractions --o test --regheader tester /mri/norm.mgz but I get the following error user-MacBook-Pro:sub-AD003S1059S61129 user$ mri_compute_volume_fractions --o test --regheader tester /mri/norm.mgz supposed to be reproducible but seed not set 7.3.2 sysname Darwin hostname user-MacBook-Pro.local machine x86_64 user <username> setenv SUBJECTS_DIR /Applications/freesurfer/7.3.2/subjects cd /Applications/freesurfer/7.3.2/subjects/sub-AD003S1059S61129 mri_compute_volume_fractions --o test --regheader tester /mri/norm.mgz outstem test regfile (null) regtype 0 segfile aseg.mgz wsurf white psurf pial TempVolFile /mri/norm.mgz USF 2 Reading in aseg and surfs from /Applications/freesurfer/7.3.2/subjects/tester Loading /Applications/freesurfer/7.3.2/subjects/tester/mri/aseg.mgz error: mghRead(/Applications/freesurfer/7.3.2/subjects/tester/mri/aseg.mgz, -1): could not open file I set all the paths so why am I not able to read the mgz file? Could anyone help me with this ? Thank you -- Best Regards Padma Priya *AI Developer * *PhenoMx, Inc.* *pr...@phenomx.ai <pr...@phenomx.ai> | (+82)10-5405-2685*
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