External Email - Use Caution thank you for your reply, I got the issue resolved.
On Thu, Oct 13, 2022 at 12:02 AM Wighton, Paul <pwigh...@mgh.harvard.edu> wrote: > Hi Padma, > > It looks like tcsh isn't installed. Can you try installing it by running > > ``` > sudo apt update > sudo apt install tcsh > ``` > > -Paul > ------------------------------ > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of priya padma < > pr...@phenomx.ai> > *Sent:* Wednesday, October 12, 2022 3:16 AM > *To:* freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu> > *Subject:* [Freesurfer] Running recon-all in parallel > > > External Email - Use Caution > > Hello team, > > As freesurfer takes lot of time for processing one subject, I was > searching on how to run recon-all for multiple subjects in parallel and I > found the following in Andy's brain book doc > > *MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1dnYvwJNSItIjaPsftdGIbD2HV040qoka4qQwTE8_MjR3zZAzEN5dFgASY5lpVSyqWiatxoOClMZYnZXmHWnRdyIRfN4hVdDAlu2GQd02ooOCXd2iCGk3j9tPOr1hfKVXEQlwJWt0GDLVac6536UspcCVTXaKnkSQFjBkVuDDBGP7c-XrNv3XR8tly8BmI2zR4YCoNWI5-9EVWhby58oYrqzDNPPokQuYsxQYjTl9eyJy_SZwbB6uMH2MYjmxw3TvJMM4DiYfCwTCbHMSSvydg7ReTdFbaM0fHhgOAL8-hxZMBQeKC4xWPBkhsDRyqO6jG_KOc7gR90dMXprnUooLFQ/https%3A%2F%2Fandysbrainbook.readthedocs.io%2Fen%2Flatest%2FFreeSurfer%2FFS_ShortCourse%2FFS_04_ReconAllParallel.html > <https://secure-web.cisco.com/1MEMXaE4I_nNiI-Rew0Vd8aEQB5KqBzrJ54sB6YQjjf_p8mYy6QKljeDcXuzbfx_nGEh14jSussDu49EGjDdEtDy9i7nDhGycEoHv-C2WdqjEmvt-sDEUJM-T9VjrR0zRNIhfY7ECdqIaqaG2WkqiywZzfdJZhHpjGK9swf1GFUb_-eEozUbvipLWVN8IAFcqY4aWeE3uWj5lMUxf0M1XqbbZ9TyAVLjHStOCwXvzLFIPWu48DBHirGnhI9VbENX2WHXdoy9URKf61mD3lkWRUTZbWfSLFh29HXyQGOxfD4F6Rg6lRhPNX1ZVN4110JWOGtMVqTIrqq2zR3MHV-vbYw/https%3A%2F%2Fandysbrainbook.readthedocs.io%2Fen%2Flatest%2FFreeSurfer%2FFS_ShortCourse%2FFS_04_ReconAllParallel.html> > > and ran > > $ ls *.nii | parallel --jobs 8 recon-all -s {.} -i {} -all -qcache > > and I get the error "/usr/bin/bash: > /home/***/***/freesurfer/bin/recon-all: /bin/tcsh: bad interpreter: No such > file or directory " > > I believe that this is not the right command for linux, ubuntu 20 OS but I > am not sure. > > Could anyone help me with this? > > Thank you > > -- > Best Regards > Padma Priya > *AI Developer * > > *PhenoMx, Inc.* > *pr...@phenomx.ai <pr...@phenomx.ai> | (+82)10-5405-2685* > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1rU0IMi37NVspEB-Tvh76QPC90b8nUn-nmYc5wfZGq0sLDlPmGiCSkLd35qyFQxlLninci2usUC9eO1WT3IOUHfuoMcaQyXqYP6aeyAA98_haYD2SzDT8-Bo643Sm5YQjLXIuJc8NPmHdSbWVuhBNCc4YnJVnQ1kbwL5UPttEbkZO4fDRzkTtc9AtXnHj4Us_J5AvMyIDH59pFWban_I_9h5bXv1Tfy5NJfAibbQCAIiUH2NCuifwiWwEPNBLLwmNb6H-S4ty29PSDCD9V-nd3u_Au-r3IkYBWcpaPRbD0dlU6ILef_sT7oHa6tYRd9nKykBrRSZLe1dMpE-JCWnlPg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1aLVD5mh4xGcDDHjTARHTqud0BhyciK_zL370M7MqYUjBH34opMpWGhsmeGEGvtPBgguVdYrm1BvzXY1OvsommtyXO8f9MSLG3cK1AL7c7Pwapnicap8WcRxvCQnx-mYhN1DVjuWq5i3lPeT9Vheg9uETPiqzWHHQW_8JvmICW6rdAuFludV7TTTOQ-kEOi4g0-zhgM7EsOJ1TQXDexcsu9KvLrFIlYonaR9mcG-QLKGiv_SwWR2cYkKlsibn_LwSBUweA-onKCO-GyDGgVun-iYAJq0rhDCTiGOaT1xTCKPkciS2uKkx8-QiscdYP_69ncAResQpbnGYnpTwIzlhNg/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1aLVD5mh4xGcDDHjTARHTqud0BhyciK_zL370M7MqYUjBH34opMpWGhsmeGEGvtPBgguVdYrm1BvzXY1OvsommtyXO8f9MSLG3cK1AL7c7Pwapnicap8WcRxvCQnx-mYhN1DVjuWq5i3lPeT9Vheg9uETPiqzWHHQW_8JvmICW6rdAuFludV7TTTOQ-kEOi4g0-zhgM7EsOJ1TQXDexcsu9KvLrFIlYonaR9mcG-QLKGiv_SwWR2cYkKlsibn_LwSBUweA-onKCO-GyDGgVun-iYAJq0rhDCTiGOaT1xTCKPkciS2uKkx8-QiscdYP_69ncAResQpbnGYnpTwIzlhNg/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. > -- Cheers Priya
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
