Hi Padma,
It looks like tcsh isn't installed. Can you try installing it by running
```
sudo apt update
sudo apt install tcsh
```
-Paul
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of priya padma
<pr...@phenomx.ai>
Sent: Wednesday, October 12, 2022 3:16 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Running recon-all in parallel
External Email - Use Caution
Hello team,
As freesurfer takes lot of time for processing one subject, I was searching on
how to run recon-all for multiple subjects in parallel and I found the
following in Andy's brain book doc
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com"
claiming to be
https://andysbrainbook.readthedocs.io/en/latest/FreeSurfer/FS_ShortCourse/FS_04_ReconAllParallel.html<https://secure-web.cisco.com/1MEMXaE4I_nNiI-Rew0Vd8aEQB5KqBzrJ54sB6YQjjf_p8mYy6QKljeDcXuzbfx_nGEh14jSussDu49EGjDdEtDy9i7nDhGycEoHv-C2WdqjEmvt-sDEUJM-T9VjrR0zRNIhfY7ECdqIaqaG2WkqiywZzfdJZhHpjGK9swf1GFUb_-eEozUbvipLWVN8IAFcqY4aWeE3uWj5lMUxf0M1XqbbZ9TyAVLjHStOCwXvzLFIPWu48DBHirGnhI9VbENX2WHXdoy9URKf61mD3lkWRUTZbWfSLFh29HXyQGOxfD4F6Rg6lRhPNX1ZVN4110JWOGtMVqTIrqq2zR3MHV-vbYw/https%3A%2F%2Fandysbrainbook.readthedocs.io%2Fen%2Flatest%2FFreeSurfer%2FFS_ShortCourse%2FFS_04_ReconAllParallel.html>
and ran
$ ls *.nii | parallel --jobs 8 recon-all -s {.} -i {} -all -qcache
and I get the error "/usr/bin/bash: /home/***/***/freesurfer/bin/recon-all:
/bin/tcsh: bad interpreter: No such file or directory "
I believe that this is not the right command for linux, ubuntu 20 OS but I am
not sure.
Could anyone help me with this?
Thank you
--
Best Regards
Padma Priya
AI Developer
[https://secure-web.cisco.com/1XLVnI0aLlqbfbCotrXgyfGAqS76ynzDA16AK0UPYPBFVyMmcGdjYw13PRbu_GL-p855BsKJU9SklwJQSakQKpxHv5eMf2-laEUBjeva9dcHFAZapnnIf93hWg8pRAWbVcg-2MydVNiXmXBj-YmWq-bH0WE41eoRC00Ckz8H1it778wY8pz28_aRWuDtNfpUn8HQutOjBgPcWHG3LdEfx0Kd7gMeX1I6sOkQq-0Z8G_WOM8MvElrz2q3TpU2zG9XFRelH-mh5Reodau1XKrdoVh54-bfua-fWehURa_uA1CwdSxNM_-9MyX9uYRF1sRe6-R7mEFWx1h4ogvwU4F4RuQ/https%3A%2F%2Fci3.googleusercontent.com%2Fmail-sig%2FAIorK4ykzpaZA1H7XsTn4HQ_Fs4hZSuCC45PmDIn7lgswekFx_3X0rBTeiaRDv_vFG8eJpfL5ziZS8s]
PhenoMx, Inc.
pr...@phenomx.ai<mailto:pr...@phenomx.ai> | (+82)10-5405-2685
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