Re: [Freesurfer] question about longitudinal data analyses

2021-07-13 Thread Ritobrato Datta
External Email - Use Caution Good morning Doug, I am trying to create a contrast matrix (also attached as a text file) for the following conditions - I have two treatment arms A and B For treatment arm A, I have subjects 1, 2, 3 imaged at TP1, TP2, TP3 For treatment arm B, I have

Re: [Freesurfer] RAM per CPU for running Freesurfer 7.1

2021-07-13 Thread Paul Wighton
External Email - Use Caution Hi Ajay The memory footprint of each pipeline is something I wish there were better records of! You're right that 4GB is outdated. It really depends on the pipeline. For cross-sectional recon-all, 20Gb should do it. For longitudinal pipelines I sus

Re: [Freesurfer] Hippocampal Subfield Definition Errors

2021-07-13 Thread Iglesias Gonzalez, Juan E.
Wow that is indeed terrible. Do you think you could send us the same sagittal slice for aseg.mgz, please? Cheers, /Eugenio Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com On Jul 13, 2021, at 22:31, Franchesca Kuhney mailto:fkuh...@uic