Wow that is indeed terrible. Do you think you could send us the same sagittal slice for aseg.mgz, please? Cheers, /Eugenio
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com On Jul 13, 2021, at 22:31, Franchesca Kuhney <fkuh...@uic.edu<mailto:fkuh...@uic.edu>> wrote: External Email - Use Caution Hi Juan, So sorry for the delay. Attached is an example image. Thanks! Best, Franchesca Franchesca Kuhney, M.A. (she/her) Clinical Psychology Doctoral Student University of Illinois at Chicago Behavioral Sciences Building | Rm 3019 1007 W. Harrison St. | Chicago, IL 60607 [https://secure-web.cisco.com/1xumyEUYVfey7EOoL0PHtyPjSb43K_ZSoqzfAE-J9-kP-4HzjTcXlNm2IFad4qp-SE0rO9xoPNJv0G5wNuY5BFq1ArtZrtUd-gydlNy3qktAfJfJ_Qbk9xLa6i-pfpoJkSWscTgBDgIbVyGDMofeJaGVzkejFt_g-LZJ3ZjMRYhHm6f-_6oKWGwMwHB2N-ZnoBbevROymDwN4vVZi0cRsJqRftqXcVyQdXDovPds6nzjtBs0RAL6YSvAY0K5O8pSrVwekoBf0GaCa6HRf5_A9iQ/https%3A%2F%2Fdrive.google.com%2Fa%2Fuic.edu%2Fuc%3Fid%3D1R1NXIxIFqUxTPkk1dgc36H1tbzYr63aH%26export%3Ddownload] ----- Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues. The information included in the email may be confidential and is meant only for the use of the intended recipient. If you received this communication in error, please notify the sender immediately and destroy the original information. On Fri, Jul 9, 2021 at 1:49 PM Iglesias Gonzalez, Juan E. <jiglesiasgonza...@mgh.harvard.edu<mailto:jiglesiasgonza...@mgh.harvard.edu>> wrote: Dear Franchesca, Could you please attach some images illustrating the problem? Cheers, /Eugenio Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://www.jeiglesias.com<https://secure-web.cisco.com/1EKjUYRaV1AenKF6G8s6WBBFlhJ_v1ZTGLVd0YetUU07DA0QVYVzalLpC8Yh4UnPtIaAlf3Y9EBAJ2ewixn-tUKyu_ON6TUXIRPgpdO1Xx1LSETQ88BILi647x-p9hKuqhyu1GufYjcFnhQscshUCQGvalVqH7y_5YrKT_xilFraxsdoO7Altkp6kW_-758YNTDE37NaI-hbxaxcI6hbTZV-hMAfArQkHxQjFTYMrCjlvikQbx78vyr0AywPP3hEtfbqJEFBapJgtwaURvH9vkw/https%3A%2F%2Fnam04.safelinks.protection.outlook.com%2F%3Furl%3Dhttp%253A%252F%252Fwww.jeiglesias.com%252F%26data%3D04%257C01%257Cfkuhne2%2540groute.uic.edu%257C3086a2b623d64332e6cd08d9430a08f9%257Ce202cd477a564baa99e3e3b71a7c77dd%257C0%257C0%257C637614533646565067%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C2000%26sdata%3D0Vq9Lu8F5QhRxGE8QzZV8WBwV6gnF7rvUqrimmoQOOk%253D%26reserved%3D0> On Jul 9, 2021, at 13:06, Franchesca Kuhney <fkuh...@uic.edu<mailto:fkuh...@uic.edu>> wrote: External Email - Use Caution Hello, I've run into an issue with the longitudinal hippocampus/amygdala segmentation (segmentHA_T1_long.sh). All of the commands ran properly and I got the outputs listed on the FreeSurfer wiki but, upon QAing the segmentations, I realized that a few subjects hippocampal segmentations were a poor fit. It appears that the segmentation includes their parahippocampal gyrus. I'm wondering if you have any recommendations for how to fix these either manually or automatically? Thank you! Kindly, Franchesca Franchesca Kuhney, M.A. (she/her) Clinical Psychology Doctoral Student University of Illinois at Chicago Behavioral Sciences Building | Rm 3019 1007 W. Harrison St. | Chicago, IL 60607 [https://secure-web.cisco.com/1puxmEK3mDm56IT5JV-3zOLSqMv5RYqFgYmoHYrQAp5MYBlH0FXgFmM2N6W2VgtUPqMnfqlwxhCUv48gthl3zpOFiFLDXBi-4UJn9X_iohYJ1MZ77rnkRSf-6io9SHkp51H6LTDgc9AVbUnDsOaOpjELnIyceWsALuSm9SvfwsWWxk2Fgy5XW_lQaQWtUnrvFhp5lGHL-Us4-ypqNv2jHbdT6cj1v1zyi-_8nePwm054SFDv4xbrcB67amiyHtbWyZra43v0abbt1OA_yPlZbbQ/https%3A%2F%2Fdrive.google.com%2Fa%2Fuic.edu%2Fuc%3Fid%3D1R1NXIxIFqUxTPkk1dgc36H1tbzYr63aH%26export%3Ddownload] ----- Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues. The information included in the email may be confidential and is meant only for the use of the intended recipient. If you received this communication in error, please notify the sender immediately and destroy the original information. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer<https://secure-web.cisco.com/1rM9wgo736dZL1oId0le05KfPQY7L7EgVOxbSrGLub9-vBq7SeeLk6hMYDo6-RMesE_UeAng94zT1-rSD6fdRW6ZrbkEnX8doeJcQOcAKkaGlyAZa4lCQCg2oA5VvpQ9ucdFJ4pzF7oC3sGaBTVPL0sexJnHWWBrZ-aymFdR6gXB69EaBwwLcxzmgg6eBDwoV45_2Flscmizi0VFWEjPNK1OPizS_jJtFHxBW9tVuw2Nq9VETIOV3j28i-noWZyN_o3Ogh0qhgXID6FxOKlUvUg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=04%7C01%7Cfkuhne2%40groute.uic.edu%7C3086a2b623d64332e6cd08d9430a08f9%7Ce202cd477a564baa99e3e3b71a7c77dd%7C0%7C0%7C637614533646585052%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000&sdata=PfBav5wrD7Co%2BtWKw%2FAha4ArUu11hb7NkZxswFS%2B4qg%3D&reserved=0<https://secure-web.cisco.com/1AZz4nUNWHdgzYzs6aaUaVkaatfWiSf7aA22XRPHi59Gyh8GBk5rAmBCZjnuDf8Nn9BKefH8pdH-5gQ8oJOnG_exjKLJ-8Gxke26GUR78s9KJizY1E8pmB5UVa_d3HcYRBh_CM6t1wX4e1Y2VRedR66btvfgM0xudh3cHtWackxrbpTCrKvVh4qZAaikZqXkoQg5JSq1N4iX_stQo2td-Qm0Eo8G2E2LyEH3G15FkzMmAZ_5b8FUgVnklNPyGBoPmejzVhEllpGCfY2ibpMmvMg/https%3A%2F%2Fnam04.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fmail.nmr.mgh.harvard.edu%252Fmailman%252Flistinfo%252Ffreesurfer%26amp%3Bdata%3D04%257C01%257Cfkuhne2%2540groute.uic.edu%257C3086a2b623d64332e6cd08d9430a08f9%257Ce202cd477a564baa99e3e3b71a7c77dd%257C0%257C0%257C637614533646585052%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C2000%26amp%3Bsdata%3DPfBav5wrD7Co%252BtWKw%252FAha4ArUu11hb7NkZxswFS%252B4qg%253D%26amp%3Breserved%3D0> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://nam04.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline&data=04%7C01%7Cfkuhne2%40groute.uic.edu%7C3086a2b623d64332e6cd08d9430a08f9%7Ce202cd477a564baa99e3e3b71a7c77dd%7C0%7C0%7C637614533646585052%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000&sdata=AF50RJgHCti6Cs7u3p6xtYFiTMEHU8WjwBILCWH5hxg%3D&reserved=0<https://secure-web.cisco.com/1fu-sqs22TdPMe3ksAY5BOqghxQl6_swvvAHO0OkF4fkD7WqfyAhpJfLD-AZwpGb31Wj6QY44pRWJR0XRVO-CN7oQieucdWFjwAJVJM5hRcUNMihRVnw641Uvrp8pMNZTQrhnC6lE1GMUAEzSJjeuuWGrkaovqNmcWjZTrVf1UjY8UprB7KR3Pwp_6bvYIuGXwyw8du4q_hKqHUhHUskf0Mnravn-0thICTwkfCXfazx3j07PDQZrNpZSC9V9pT1k9QIpmByuqrbaDZRoU0nP7A/https%3A%2F%2Fnam04.safelinks.protection.outlook.com%2F%3Furl%3Dhttp%253A%252F%252Fwww.massgeneralbrigham.org%252Fcomplianceline%26amp%3Bdata%3D04%257C01%257Cfkuhne2%2540groute.uic.edu%257C3086a2b623d64332e6cd08d9430a08f9%257Ce202cd477a564baa99e3e3b71a7c77dd%257C0%257C0%257C637614533646585052%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C2000%26amp%3Bsdata%3DAF50RJgHCti6Cs7u3p6xtYFiTMEHU8WjwBILCWH5hxg%253D%26amp%3Breserved%3D0> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail. <Screen Shot 2021-07-13 at 3.50.59 PM.png>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://www.massgeneralbrigham.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
