Dear FreeSurfers
I'm wondering about the flattenning options of FS I've saw that the
"mris-flatten" command does the trick but, it asks for a patch, my questions
are: can I flat any cortical region? and, how do I create a patch to
mris_flatten?
Thanks in advanced,
Gabriel
Dear All,
I am working with the volume-based stream in Freesurfer and I have a question
about what is the difference between the volumes given for
Cortical-white-matter and Cerebral-white-matter? How are the volumes calculated
for both in Freesurfer? Is it the difference of including or not inc
Hi Gabriel
you cut the patch out in tksurfer first, then call mris_flatten. For
small patches such as occipital ones we typically use the -complete
option these days which minimizes the complete distance distortion matrix.
cheers
Bruce
On Fri, 20 May 2011, Gabriel Go.Es. wrote:
>
> Dear Free
Continuing the conversation, if I have a flattened patch like an occipital
patch, and i manually draw a label on it and save it, can I then use
mri_label2label to map it to other subjects ?
Thx
Ri
- Original Message -
From: "Bruce Fischl"
To: "Gabriel Go.Es."
Cc: "free surfer"
Sent:
yes
On Fri, 20 May 2011, Ritobrato Datta wrote:
> Continuing the conversation, if I have a flattened patch like an occipital
> patch, and i manually draw a label on it and save it, can I then use
> mri_label2label to map it to other subjects ?
>
> Thx
>
> Ri
>
> - Original Message -
> Fr
Which version of FreeSurfer are you using? In the more recent versions, they
are the same. Cortical White Matter is all the white matter contained within
the white surface minus the subcortical gray matter and ventricles, etc.
On May 20, 2011, at 7:37 AM, "Righart, Ruthger Dr."
wrote:
> Dear
Hi Allison,
Thank you very much for your help! I am using v5.0.0.
Is the surface of the white-matter (from the surface-based stream) used here to
calculate the volume in CorticalWhiteMatterVol and is this why I have
sub-millimeter values here?
This value is in fact different from the value that
Thank you bruce,
Now I'm trying to flatten a part of the surface, now i'm wondering if it is
possible to set an overlay to the flatten surface just as in the inflated by
loading it on tksurfer.
Bests,
Gabriel
> Date: Fri, 20 May 2011 08:26:40 -0400
> From: fis...@nmr.mgh.harvard.edu
> To
sure. Just load a surface in tksurfer, then use file->load patch to load
the flattened patch
On Fri, 20 May 2011, Gabriel Go.Es. wrote:
>
> Thank you bruce,
> Now I'm trying to flatten a part of the surface, now i'm wondering if it is
> possible to set an overlay to the flatten surface just as i
