Continuing the conversation, if I have a flattened patch like an occipital 
patch, and i manually draw a label on it and save it, can I then use 
mri_label2label to map it to other subjects ?

Thx

Ri

----- Original Message -----
From: "Bruce Fischl" <fis...@nmr.mgh.harvard.edu>
To: "Gabriel Go.Es." <gabriel...@hotmail.com>
Cc: "free surfer" <freesurfer@nmr.mgh.harvard.edu>
Sent: Friday, May 20, 2011 8:26:40 AM
Subject: Re: [Freesurfer] flattenning question

Hi Gabriel

you cut the patch out in tksurfer first, then call mris_flatten. For 
small patches such as occipital ones we typically use the -complete 
option these days which minimizes the complete distance distortion matrix.

cheers
Bruce


On Fri, 20 May 2011, Gabriel Go.Es. wrote:

>
> Dear FreeSurfers
>
> I'm wondering about the flattenning options of FS I've saw that the 
> "mris-flatten" command does the trick but, it asks for a patch, my questions 
> are: can I flat any cortical region? and, how do I create a patch to 
> mris_flatten?
>
> Thanks in advanced,
> Gabriel
>
>
>
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