Hi
niiRead(): unsupported timing pattern in
Pre_DB/DB_Prelip_BET.feat/example_func.nii.gz
sorry for the delay,
Best wishes
Carolyn
can you send the log file?
Furlong, Carolyn wrote:
Hi,
When I try to register my functional data to anatomical data using
Can I open images parcellated with an old version of freesurfer (the one
parcellating 80 regions) with the new one (based upon the Desikan
atals)?
Thanks,
Francesca
Francesca Bagnato, MD-PhD
Staff Scientist, NIB-NINDS-NIH
Building 10, Room 5S205
9000 Rockville Pike
Bethesda, MD, 20892-1400 MSC
Ph
you should be able to
On Wed, 16 May 2007, Bagnato, Francesca (NIH/NINDS)
[E] wrote:
Can I open images parcellated with an old version of freesurfer (the one
parcellating 80 regions) with the new one (based upon the Desikan
atals)?
Thanks,
Francesca
Francesca Bagnato, MD-PhD
Staff Scientist,
But is there any possibility that the mismatch between the two
interfaces (old and new version) render the output wrong?
-Original Message-
From: Bruce Fischl [mailto:[EMAIL PROTECTED]
Sent: Wednesday, May 16, 2007 2:17 PM
To: Bagnato, Francesca (NIH/NINDS) [E]
Cc: freesurfer@nmr.mgh.ha
I don't think so, but maybe I don't understand. The parcellations are
defined on the surfaces, so if they look okay you should be all set (they
can't be misregistered)
On Wed, 16 May 2007, Bagnato, Francesca (NIH/NINDS)
[E] wrote:
But is there any possibility that the mismatch between the t
But can it be also the other way around - i.e. they do not look okay
because of the mismatch between softwares?
-Original Message-
From: Bruce Fischl [mailto:[EMAIL PROTECTED]
Sent: Wednesday, May 16, 2007 2:22 PM
To: Bagnato, Francesca (NIH/NINDS) [E]
Cc: freesurfer@nmr.mgh.harvard.edu
S
I don't think so. They would not look okay if the surfaces were
regenerated, but I think the new tools should be able to display the old
parcellations. Are you having problems with this?
On Wed, 16 May 2007,
Bagnato, Francesca (NIH/NINDS) [E] wrote:
But can it be also the other way around - i
No I am having some bad parcellations on images done with the previous
software and I am just trying to rescue thembut apparently...there
is no hope..
Francesca
-Original Message-
From: Bruce Fischl [mailto:[EMAIL PROTECTED]
Sent: Wednesday, May 16, 2007 2:26 PM
To: Bagnato, Francesc
if you rerun them do they get better?
On Wed, 16 May 2007, Bagnato,
Francesca (NIH/NINDS) [E] wrote:
No I am having some bad parcellations on images done with the previous
software and I am just trying to rescue thembut apparently...there
is no hope..
Francesca
-Original Message-
I am new to FreeSurfer and am attempting to segment T1 images using the
"recon-all...autorecon2" command. The segmentation results look quite
accurate, but I was wondering how to best edit the results (where there
is a need). I noticed on the Wiki a possible option using the TkMedit
program.
My problem is that I do not have the old version anymore and if I re-run
the recon all stage 3, I am not sure I can end up with the old
parcellation...Can I?
-Original Message-
From: Bruce Fischl [mailto:[EMAIL PROTECTED]
Sent: Wednesday, May 16, 2007 2:30 PM
To: Bagnato, Francesca (NIH/
I think by default we generate both parcellations (Christophe.s and Ron
and Rahul's)
On Wed, 16 May 2007, Bagnato, Francesca (NIH/NINDS) [E] wrote:
My problem is that I do not have the old version anymore and if I re-run
the recon all stage 3, I am not sure I can end up with the old
parcellatio
OK, thanks,
Francesca
-Original Message-
From: Bruce Fischl [mailto:[EMAIL PROTECTED]
Sent: Wednesday, May 16, 2007 2:36 PM
To: Bagnato, Francesca (NIH/NINDS) [E]
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] (no subject)
I think by default we generate both parcellations
what is the error?
On Wed, 16 May 2007, Jared Conley wrote:
I am new to FreeSurfer and am attempting to segment T1 images using the
"recon-all...autorecon2" command. The segmentation results look quite
accurate, but I was wondering how to best edit the results (where there is a
need). I noti
Bruce Fischl wrote:
could be. Is it set to the right place?
On Wed, 16 May 2007, Jared Conley wrote:
Bruce Fischl wrote:
what is the error?
On Wed, 16 May 2007, Jared Conley wrote:
I am new to FreeSurfer and am attempting to segment T1 images using
the "recon-all...autorecon2" command. Th
Actually, I wanted the log file found in
featdir/reg/freesurfer/reg-feat2anat.log.
doug
Furlong, Carolyn wrote:
Hi
niiRead(): unsupported timing pattern in
Pre_DB/DB_Prelip_BET.feat/example_func.nii.gz
sorry for the delay,
Best wishes
Carolyn
can you send the log file?
Furlong
Dear FreeSurfers,
I'd like to add a temporal derivative to my gammafit model and
understand that this can be done using mkanalysis-sess. However, I can't
seem to track down the relevant flag (using -help or the wiki). Can
someone point me in the right direction?
Thanks!
Dan Dillon
_
Hi Dan,
sorry, you can do it for the SPM HRF but not for the gamma.
doug
Dan Dillon wrote:
Dear FreeSurfers,
I'd like to add a temporal derivative to my gammafit model and
understand that this can be done using mkanalysis-sess. However, I can't
seem to track down the relevant flag (using -h
Hi,
I have a question about using tkmedit. Up until now, our group has been
editing out the eye muscles after autorecon-1 and editing out the optic
nerve after autorecon-2. I know on earlier versions of freesurfer it was
highly recommended to do so because the program would sometimes crash
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