Bruce Fischl wrote:
could be. Is it set to the right place?


On Wed, 16 May 2007, Jared Conley wrote:

Bruce Fischl wrote:
what is the error?
On Wed, 16 May 2007, Jared Conley wrote:

I am new to FreeSurfer and am attempting to segment T1 images using the "recon-all...autorecon2" command. The segmentation results look quite accurate, but I was wondering how to best edit the results (where there is a need). I noticed on the Wiki a possible option using the TkMedit program. I have tried running the command "tkmedit subjid wm.mgz -aux T1.mgz" as directed, but it gives me an error. Could someone direct me to the correct tutorial or answer my question directly. Thanks.

Jared
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X11 terminal says "Error: Loading volume ... couldn't read the anatomical volume." I am worried that perhaps it's due to my SUBJECTS_DIR environment variable not being properly set, as indicated in the Wiki. Let me know what you think.



It is working now.  Thanks for the assistance.


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