I think by default we generate both parcellations (Christophe.s and Ron
and Rahul's)
On Wed, 16 May 2007, Bagnato, Francesca (NIH/NINDS) [E] wrote:
My problem is that I do not have the old version anymore and if I re-run
the recon all stage 3, I am not sure I can end up with the old
parcellation...Can I?
-----Original Message-----
From: Bruce Fischl [mailto:[EMAIL PROTECTED]
Sent: Wednesday, May 16, 2007 2:30 PM
To: Bagnato, Francesca (NIH/NINDS) [E]
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] (no subject)
if you rerun them do they get better?
On Wed, 16 May 2007, Bagnato,
Francesca (NIH/NINDS) [E] wrote:
No I am having some bad parcellations on images done with the previous
software and I am just trying to rescue them....but apparently...there
is no hope..
Francesca
-----Original Message-----
From: Bruce Fischl [mailto:[EMAIL PROTECTED]
Sent: Wednesday, May 16, 2007 2:26 PM
To: Bagnato, Francesca (NIH/NINDS) [E]
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] (no subject)
I don't think so. They would not look okay if the surfaces were
regenerated, but I think the new tools should be able to display the
old parcellations. Are you having problems with this?
On Wed, 16 May 2007,
Bagnato, Francesca (NIH/NINDS) [E] wrote:
But can it be also the other way around - i.e. they do not look okay
because of the mismatch between softwares?
-----Original Message-----
From: Bruce Fischl [mailto:[EMAIL PROTECTED]
Sent: Wednesday, May 16, 2007 2:22 PM
To: Bagnato, Francesca (NIH/NINDS) [E]
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] (no subject)
I don't think so, but maybe I don't understand. The parcellations are
defined on the surfaces, so if they look okay you should be all set
(they can't be misregistered)
On Wed, 16 May 2007, Bagnato, Francesca (NIH/NINDS) [E] wrote:
But is there any possibility that the mismatch between the two
interfaces (old and new version) render the output wrong?
-----Original Message-----
From: Bruce Fischl [mailto:[EMAIL PROTECTED]
Sent: Wednesday, May 16, 2007 2:17 PM
To: Bagnato, Francesca (NIH/NINDS) [E]
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] (no subject)
you should be able to
On Wed, 16 May 2007, Bagnato, Francesca (NIH/NINDS) [E] wrote:
Can I open images parcellated with an old version of freesurfer
(the
one parcellating 80 regions) with the new one (based upon the
Desikan
atals)?
Thanks,
Francesca
Francesca Bagnato, MD-PhD
Staff Scientist, NIB-NINDS-NIH
Building 10, Room 5S205
9000 Rockville Pike
Bethesda, MD, 20892-1400 MSC
Phone #: (301) 594-1415
Fax #: (301) 402-0373
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