glad to hear it worked out
cheers
Bruce
On Sat, 22 Jan 2011, Ilana Hairston wrote:
> Thanks,
> We were able to fix the slow processing problem. Since we save separate
> versions for each topologicl edit step, we can go back if a problem occurs.
> Indeed when fixing skull strip we edited out some
Thanks,
We were able to fix the slow processing problem. Since we save separate
versions for each topologicl edit step, we can go back if a problem occurs.
Indeed when fixing skull strip we edited out some cortex.
Without these edits processing ran fine.
So all was not lost, thanks for you help
i
2. recon-all runs the old fixer 'mris_fix_topology', and if that fails
the euler number check, then it runs the new fixer 'mris_topo_fixer'.
of course really bad brains fail both.
n.
On Mon, 2011-01-17 at 13:56 -0500, Bruce Fischl wrote:
> Hi Ilana,
>
> 1. This is usually because of big topologic
Hi Ilana,
1. This is usually because of big topological defects, in the worst case if
the cerebellum or skull are attached. Look at the end of the recon-all.log
and see what it is in the middle of doing. If it's topology fixing, check
the inflated.nofix file and see if there is a huge defect.
