glad to hear it worked out cheers Bruce On Sat, 22 Jan 2011, Ilana Hairston wrote:
> Thanks, > We were able to fix the slow processing problem. Since we save separate > versions for each topologicl edit step, we can go back if a problem occurs. > Indeed when fixing skull strip we edited out some cortex. > Without these edits processing ran fine. > > So all was not lost, thanks for you help > ilana > > On 17 January 2011 13:56, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > >> Hi Ilana, >> >> 1. This is usually because of big topological defects, in the worst case if >> the cerebellum or skull are attached. Look at the end of the recon-all.log >> and see what it is in the middle of doing. If it's topology fixing, check >> the inflated.nofix file and see if there is a huge defect. >> >> 2. This is also a topology fixer problem. Nick: isn't it only in the new >> fixer? >> >> Bruce >> >> >> >> On Mon, 17 Jan 2011, Ilana Hairston wrote: >> >> Hi there, >>> we are having two unrelated problems with a couple of files: >>> >>> 1. A brain running extremely slow, after initial processing. i.e. we ran >>> recon-all, made some edits (control points etc.) and now for some reason >>> the >>> second round is taking days. >>> 2. An error message*: ERROR: _FindFacePath: could not find path! *We >>> looked it up on the freesurfer wiki and there is an entry about this >>> error, >>> but the answer perhaps was not posted. >>> >>> thanks >>> ilana >>> >>> >>> >>> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
