2. recon-all runs the old fixer 'mris_fix_topology', and if that fails the euler number check, then it runs the new fixer 'mris_topo_fixer'. of course really bad brains fail both.
n. On Mon, 2011-01-17 at 13:56 -0500, Bruce Fischl wrote: > Hi Ilana, > > 1. This is usually because of big topological defects, in the worst case if > the cerebellum or skull are attached. Look at the end of the recon-all.log > and see what it is in the middle of doing. If it's topology fixing, check > the inflated.nofix file and see if there is a huge defect. > > 2. This is also a topology fixer problem. Nick: isn't it only in the new > fixer? > > Bruce > > > On Mon, 17 Jan 2011, Ilana Hairston wrote: > > > Hi there, > > we are having two unrelated problems with a couple of files: > > > > 1. A brain running extremely slow, after initial processing. i.e. we ran > > recon-all, made some edits (control points etc.) and now for some reason the > > second round is taking days. > > 2. An error message*: ERROR: _FindFacePath: could not find path! *We > > looked it up on the freesurfer wiki and there is an entry about this error, > > but the answer perhaps was not posted. > > > > thanks > > ilana > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
