Thanks, We were able to fix the slow processing problem. Since we save separate versions for each topologicl edit step, we can go back if a problem occurs. Indeed when fixing skull strip we edited out some cortex. Without these edits processing ran fine.
So all was not lost, thanks for you help ilana On 17 January 2011 13:56, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Ilana, > > 1. This is usually because of big topological defects, in the worst case if > the cerebellum or skull are attached. Look at the end of the recon-all.log > and see what it is in the middle of doing. If it's topology fixing, check > the inflated.nofix file and see if there is a huge defect. > > 2. This is also a topology fixer problem. Nick: isn't it only in the new > fixer? > > Bruce > > > > On Mon, 17 Jan 2011, Ilana Hairston wrote: > > Hi there, >> we are having two unrelated problems with a couple of files: >> >> 1. A brain running extremely slow, after initial processing. i.e. we ran >> recon-all, made some edits (control points etc.) and now for some reason >> the >> second round is taking days. >> 2. An error message*: ERROR: _FindFacePath: could not find path! *We >> looked it up on the freesurfer wiki and there is an entry about this >> error, >> but the answer perhaps was not posted. >> >> thanks >> ilana >> >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- ******************************* peligro! flaca pero mala! ******************************
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