Thanks a lot Nick.
It worked like a charm:
"recon-all -s struct_FS finished without error at Thu Aug 23 03:52:39
PDT 2012
done"
For other users whose OS automatically unzips the .gz,
the command to type is:
sudo tar xvf freesurfer-Darwin-tiger-ppc-stable-pub-v5.1.0.tar
Thanks!
Fidel
On
Fidel,
I don't know why those files are missing from the Tiger ppc distribution,
but i confirmed that indeed they are. Here is a tarball of the
distribution which contains everything:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.1.0/freesurfer-Darwin-tiger-ppc-stable-pub-v5.1.0.tar.gz
Hi,
I'm reposting this, hoping Nick has returned and can provide some
guidance.
Thanks,
Fidel
On 1-Aug-12, at 8:16 AM, Douglas N Greve wrote:
> This is strange, it must be something that is specific to the PPC
> Mac distribution. Nick is going to have to deal with this, but he
> won't be
This is strange, it must be something that is specific to the PPC Mac
distribution. Nick is going to have to deal with this, but he won't be
back until Mon. Can you wait that long?
doug
On 07/31/2012 06:01 PM, Fidel Vila wrote:
>> And there is nothing in /Applications/freesurfer/bin?
>
> There a
> And there is nothing in /Applications/freesurfer/bin?
There are 357 items in /Applications/freesurfer/bin
> Are there any files in the other directories?
Indeed, from /Application/freesurfer/average (50 items in here) to /
Applications/freesurfer/trctrain (35 items) as well as 'LICENSE' file,
And there is nothing in /Applications/freesurfer/bin? Are there any files in
the other directories? Do you have permission to install it in that location?
If nothing is in the bin dir, then there is no need to try recon-all, it will
always fail.
doug
On 07/31/2012 04:05 PM, Fidel Vila wrote:
Hi Doug,I re-installed freesurfer, and I still get the same error message (terminal output attached); bin files are still missing from bin folder.Shall I report this as a bug?Regards,Fidel
Last login: Tue Jul 31 12:51:32 on ttyp2
Welcome to Darwin!
a3128u:~ FVila$ export FREESURFER_HOME=/Applicatio
Try re-installing. Make sure you have enough disk space.
doug
On 07/30/2012 12:43 AM, Fidel Vila wrote:
> Hi Doug.
> The missing files are NOT in $FREESURFER_HOME/bin; So, I guess that's why
> they are not found even though the path is set up in the system PATH variable.
> Suggestions?
> Fidel
>
Hi Doug.
The missing files are NOT in $FREESURFER_HOME/bin; So, I guess that's
why they are not found even though the path is set up in the system
PATH variable.
Suggestions?
Fidel
Are the missing files in $FREESURFER_HOME/bin and is that path in your
system PATH variable?
On 07/26/2012 01:
Are the missing files in $FREESURFER_HOME/bin and is that path in your
system PATH variable?
On 07/26/2012 01:29 PM, Fidel Vila wrote:
> Thanks for your prompt reply, Doug.
>
> I've been checking and following the wiki instructions with regards to
> setting up proper paths, and I could not find
Thanks for your prompt reply, Doug.I've been checking and following the wiki instructions with regards to setting up proper paths, and I could not find an obvious (to me) problem there.I attach a file with things I have tried and issues I have found.Further advice will be greatly appreciate it.Many
did you set up your environment so that your path environment variable
has all the proper paths in it? Look at the wiki for instructions.
doug
On 7/25/12 7:57 PM, Fidel Vila wrote:
Hi Freesurfer experts,
I recently installed FS (PowerPC architecture version available on FS
website) on a Mac O
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