Try re-installing. Make sure you have enough disk space. doug On 07/30/2012 12:43 AM, Fidel Vila wrote: > Hi Doug. > The missing files are NOT in $FREESURFER_HOME/bin; So, I guess that's why > they are not found even though the path is set up in the system PATH variable. > Suggestions? > Fidel > Are the missing files in $FREESURFER_HOME/bin and is that path in your > system PATH variable? > > On 07/26/2012 01:29 PM, Fidel Vila wrote: > > Thanks for your prompt reply, Doug. > > > > I've been checking and following the wiki instructions with regards to > > setting up proper paths, and I could not find an obvious (to me) > > problem there. > > > > I attach a file with things I have tried and issues I have found. > > > > Further advice will be greatly appreciate it. > > > > Many thanks, > > > > Fidel > > > > > > > > > > > > On 25-Jul-12, at 8:22 PM, Douglas Greve wrote: > > > >> did you set up your environment so that your path environment > >> variable has all the proper paths in it? Look at the wiki for > >> instructions. > >> doug > >> > >> On 7/25/12 7:57 PM, Fidel Vila wrote: > >>> Hi Freesurfer experts, > >>> > >>> I recently installed FS (PowerPC architecture version available on > >>> FS website) on a Mac OS X 10.4.11 and I get the attached output > >>> error when running recon-all. > >>> > >>> Advice on how to troubleshoot this would be appreciate. > >>> > >>> Thanks, > >>> > >>> Fidel > >>> > >>> > >>> > >>> _______________________________________________ > >>> Freesurfer mailing list > >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> The information in this e-mail is intended only for the person to > >> whom it is > >> addressed. If you believe this e-mail was sent to you in error and > >> the e-mail > >> contains patient information, please contact the Partners Compliance > >> HelpLine at > >> http://www.partners.org/complianceline . If the e-mail was sent to > >> you in error > >> but does not contain patient information, please contact the sender > >> and properly > >> dispose of the e-mail. > >> > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop:www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > Fidel Vila-Rodriguez, MD, FRCPC > Clinical Assistant Professor, Faculty of Medicine, Dpt. of Psychiatry, > University of British Columbia > UBC Clinician Investigator Fellow > UBC Graduate Program in Neuroscience Ph.D Candidate > > BC Mental Health and Addiction Research Institute > A3-128-4, 938 West 28th Ave > Vancouver, BC > V5Z 4H4 > Tel: 604-875-2000 Ext. 4732 > Fax: 604-875-3871 >
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
