Re: [Freesurfer] thickness from pial and white

2014-12-10 Thread Xiaomin Yue
B48/surf/lh.gray >>> >>> MRISread(/misc/data41/yuex/recon_test/test_DB48/surf/lh.gray): could not >>> open file. >>> Thanks, >>> Xiaomin >>> ____________ >>> From: yu...

Re: [Freesurfer] thickness from pial and white

2014-12-10 Thread Bruce Fischl
s, Xiaomin From: yu...@hotmail.com To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] thickness from pial and white Date: Wed, 10 Dec 2014 02:47:02 + Thanks. I will try mris_fill. Xiaomin From: Bruce Fischl Sent: ‎Tuesday‎, ‎December‎ ‎9‎, ‎2014 ‎4‎:‎31‎ ‎PM To: Freesurfer suppo

Re: [Freesurfer] thickness from pial and white

2014-12-10 Thread Xiaomin Yue
>> MRISread(/misc/data41/yuex/recon_test/test_DB48/surf/lh.gray): could not >> open file. >> Thanks, >> Xiaomin >> ________ >> From: yu...@hotmail.com >> To: freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] thickness from pial and white

2014-12-10 Thread Xiaomin Yue
>> MRISread(/misc/data41/yuex/recon_test/test_DB48/surf/lh.gray): could not >> open file. >> Thanks, >> Xiaomin >> ________ >> From: yu...@hotmail.com >> To: freesurfer@nmr.mg

Re: [Freesurfer] thickness from pial and white

2014-12-10 Thread Bruce Fischl
aomin From: yu...@hotmail.com To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] thickness from pial and white Date: Wed, 10 Dec 2014 02:47:02 + Thanks.  I will try mris_fill. Xiaomin From: Bruce Fischl Sent: ‎Tuesday‎, ‎December‎ ‎9‎, ‎2014 ‎4‎:‎31‎ ‎PM To: Freesurfer support

Re: [Freesurfer] thickness from pial and white

2014-12-10 Thread Xiaomin Yue
MRISread(/misc/data41/yuex/recon_test/test_DB48/surf/lh.gray): could not open file. Thanks,Xiaomin From: yu...@hotmail.com To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] thickness from pial and white Date: Wed, 10 Dec 2014 02:47:02 + Thanks. I will try

Re: [Freesurfer] thickness from pial and white

2014-12-09 Thread Xiaomin Yue
> mris_thickness? I need the wm.mgz to generate the ratio of gray >>> vs. white matter. >>> >>> Xiaomin >>> >>> Date: Tue, 9 Dec 2014 09:55:21 -0500 >>> From: fis...@nmr.mgh.harvard.edu >>> To: freesurfer

Re: [Freesurfer] thickness from pial and white

2014-12-09 Thread Bruce Fischl
1:08 PM, Xiaomin Yue wrote: >>> >>> Hi Bruce, >>> >>> Thanks for your response. What's the inputs to the >>> mris_thickness? I need the wm.mgz to generate the ratio of gray >>> vs. white matter. >>> >>> Xiaomin >>

Re: [Freesurfer] thickness from pial and white

2014-12-09 Thread Xiaomin Yue
ponse. What's the inputs to the >> mris_thickness? I need the wm.mgz to generate the ratio of gray >> vs. white matter. >> >> Xiaomin >> >> Date: Tue, 9 Dec 2014 09:55:21 -0500 >> From: fis...@nmr.mgh.harvard.edu >> T

Re: [Freesurfer] thickness from pial and white

2014-12-09 Thread Bruce Fischl
urfer] thickness from pial and white the thickness you can generate using mris_thikness. Why do you want to generate a wm.mgz? I guess you could from the wmparc On Mon, 8 Dec 2014, Xiaomin Yue wrote: > > Hi All, > >   > > Cortical surface reconstructed using caret from a h

Re: [Freesurfer] thickness from pial and white

2014-12-09 Thread Bruce Fischl
mgh.harvard.edu To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] thickness from pial and white the thickness you can generate using mris_thikness. Why do you want to generate a wm.mgz? I guess you could from the wmparc On Mon, 8 Dec 2014, Xiaomin Yue wrote: > > Hi All, >

Re: [Freesurfer] thickness from pial and white

2014-12-09 Thread Xiaomin Yue
o generate the ratio of gray vs. white matter. > > Xiaomin > > Date: Tue, 9 Dec 2014 09:55:21 -0500 > From: fis...@nmr.mgh.harvard.edu > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] thickness from pial and white > > the thickness you can generate usi

Re: [Freesurfer] thickness from pial and white

2014-12-09 Thread Xiaomin Yue
urfer] thickness from pial and white the thickness you can generate using mris_thikness. Why do you want to generate a wm.mgz? I guess you could from the wmparc On Mon, 8 Dec 2014, Xiaomin Yue wrote: > > Hi All, > > > > Cortical surface reconstructed using caret from a high reso

Re: [Freesurfer] thickness from pial and white

2014-12-09 Thread Bruce Fischl
the thickness you can generate using mris_thikness. Why do you want to generate a wm.mgz? I guess you could from the wmparc On Mon, 8 Dec 2014, Xiaomin Yue wrote: Hi All,   Cortical surface reconstructed using caret from a high resolution MRI data (0.25 mm) has been converted to freesurfe

[Freesurfer] thickness from pial and white

2014-12-08 Thread Xiaomin Yue
Hi All, Cortical surface reconstructed using caret from a high resolution MRI data (0.25 mm) has been converted to freesurfer format, and viewed correctly using freeview. My questions are whether it is possible to generate 1) a ?h.thickness from the ?h.pial and ?h.white; 2) wm