mris_thickness
usage: mris_thickness [options] <subject name> <hemi> <thickness file>
This program measures the thickness of the cortical surface and
writes the resulting scalar field into a 'curvature' file <thickness
file>.
valid options are:
-max <max> use <max> to threshold thickness (default=5mm)
-fill_holes <cortex label> <fsaverage cortex label> fill in thickness in
holes in the cortex label
On
Tue, 9 Dec 2014, Xiaomin Yue wrote:
Hi Bruce,
Thanks for your response. What's the inputs to the mris_thickness? I need
the wm.mgz to generate the ratio of gray vs. white matter.
Xiaomin
Date: Tue, 9 Dec 2014 09:55:21 -0500
From: fis...@nmr.mgh.harvard.edu
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] thickness from pial and white
the thickness you can generate using mris_thikness. Why do you want to
generate a wm.mgz? I guess you could from the wmparc
On Mon, 8 Dec 2014,
Xiaomin Yue wrote:
>
> Hi All,
>
>
>
> Cortical surface reconstructed using caret from a high resolution MRI data
> (0.25 mm) has been converted to freesurfer format, and viewed correctly
> using freeview. My questions are whether it is possible to generate 1) a
> ?h.thickness from the ?h.pial and ?h.white; 2) wm.mgz file using ?h.pial a
nd
> ?h.white
>
>
>
> Thanks very much for your inputs.
>
>
> Xiaomin
>
>
>
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