Thanks. I will try mris_fill.
Xiaomin
From: Bruce Fischl
Sent: Tuesday, December 9, 2014 4:31 PM
To: Freesurfer support list
it creates a file in curvature format, yes. Did you try mris_fill for the
wm.mgz? It won't be exactly the same as the one we would generate. You
could use mris_fill to generate the interior of the ?h.white surface,
then use the aseg to remove non-wm voxels I guess
On Tue, 9 Dec 2014,
Xiaomin Yue wrote:
> Thanks very much. Does this create curvature file? Again, is it possible to
> generate wm.mgz from those files?
>
> Thanks,
> Xiaomin
>
>
>> On Dec 9, 2014, at 4:19 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
>>
>> I think just the ?h.white and ?h.pial
>>
>> cheers
>> Bruce
>>> On Tue, 9 Dec 2014, Xiaomin Yue wrote:
>>>
>>> What I mean by inputs is the default files the mris_thickness will be
>>> looking for to run correctly
>>> Xiaomin
>>> On Dec 9, 2014, at 1:08 PM, Xiaomin Yue <yu...@hotmail.com> wrote:
>>>
>>> Hi Bruce,
>>>
>>> Thanks for your response. What's the inputs to the
>>> mris_thickness? I need the wm.mgz to generate the ratio of gray
>>> vs. white matter.
>>>
>>> Xiaomin
>>>
>>> Date: Tue, 9 Dec 2014 09:55:21 -0500
>>> From: fis...@nmr.mgh.harvard.edu
>>> To: freesurfer@nmr.mgh.harvard.edu
>>> Subject: Re: [Freesurfer] thickness from pial and white
>>> the thickness you can generate using mris_thikness. Why do you want to
>>> generate a wm.mgz? I guess you could from the wmparc
>>> On Mon, 8 Dec 2014, Xiaomin Yue wrote:
>>>>> Hi All,
>>>>>
>>>>> Cortical surface reconstructed using caret from a high resolution MRI data
>>>> (0.25 mm) has been converted to freesurfer format, and viewed correctly
>>>> using freeview. My questions are whether it is possible to generate 1) a
>>>> ?h.thickness from the ?h.pial and ?h.white; 2) wm.mgz file using ?h.pial a
>>> nd
>>>> ?h.white
>>>>>
>>>>> Thanks very much for your inputs.
>>>>>> Xiaomin
>>>>>>
>>>
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