Re: [Freesurfer] errors in wm and pial boundaries

2016-06-07 Thread Corinna Bauer
Hello, Have you been able to look at the data I sent over yet? It would be great to get a sense of what we can or cannot do to correct the boundaries. Thanks Corinna On Wed, May 25, 2016 at 12:05 PM, Corinna Bauer wrote: > Hi Bruce, just checking in to see if you have had an opportunity to tak

Re: [Freesurfer] errors in wm and pial boundaries

2016-05-25 Thread Corinna Bauer
Hi Bruce, just checking in to see if you have had an opportunity to take a look at the data I sent over? Thanks Corinna On Wed, May 18, 2016 at 6:19 PM, Corinna Bauer wrote: > Sure. I'm uploading now. The above is approximately slice 75, although the > control points/wm surface problem is seen

Re: [Freesurfer] errors in wm and pial boundaries

2016-05-18 Thread Corinna Bauer
Sure. I'm uploading now. The above is approximately slice 75, although the control points/wm surface problem is seen throughout in this subject. Thanks Corinna On Tue, May 17, 2016 at 3:46 PM, Bruce Fischl wrote: > Hi Corinna > > it's hard to tell what's going on from a single slice. If you up

Re: [Freesurfer] errors in wm and pial boundaries

2016-05-17 Thread Bruce Fischl
Hi Corinna it's hard to tell what's going on from a single slice. If you upload the subject and tell us the specific coordinates that you see problems in we will take a look cheers Bruce On Tue, 17 May 2016, Corinna Bauer wrote: Hello all,We are analyzing data from our collaborators and are

[Freesurfer] errors in wm and pial boundaries

2016-05-17 Thread Corinna Bauer
Hello all, We are analyzing data from our collaborators and are running into some difficulties with the accuracy of the pial and wm boundaries. The wm.mgz appears to follow the actual WM, independent of the wm surface boundary. Attached is an example showing two types of problems. 1. the WM surface