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Firstly, thanks for your explanation, I didn't know that it would take less
than hours since I used recon-all to run 202 samples, I used parallel to
run 8 images at once and it took almost 13 hours, but at the end , you can
be sure of the results you ha
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I've tested reproducibility of the results either using ASEG (therefore
via recon-all -all) and also SAMSEG (via run_samseg).
The methods are different either in terms of reproducibility of results.
Multiple runs of ASEG (recon-all -all) provide the
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Why you didn't run recon-all directly ?
Le sam. 27 août 2022 à 11:32, Giulio Siracusano
a écrit :
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>
> Hello,
>
> this is true (i.e. reproducibility) for ASEG (when running recon-all -all).
>
> But, if you use SA
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Hello,
this is true (i.e. reproducibility) for ASEG (when running recon-all -all).
But, if you use SAMSEG (i.e. running run_samseg instead) you get
slightly different results everytime. This is regardless you use
-threads flag or not.
My command li
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I used freesurfer for ADNI data, specifically MRI for AD/CN. Even I run
segmentation many times , I always having the same statistics. Would you
share with us the commend line you used !
Le sam. 27 août 2022 à 09:32, Giulio Siracusano
a écrit :
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Hi Douglas,
I've investigated the use of SAMSEG for AD/MCI patients. I'm using the
7.2 version of Freesurfer and I've realized that I get different results
using the same data but when I run the SAMSEG multiple times (on the
same patient).
Differen
On 2/16/2022 4:12 AM, k3...@free.fr wrote:
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> Hi FreeSurfer community,
>
> I recently discovered the SAMSEG application in the FreeSurfer 7.2.0 release
> and started to give a try on few subjects were FreeSurfer was having a hard
> time to segment brain
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Hi FreeSurfer community,
I recently discovered the SAMSEG application in the FreeSurfer 7.2.0 release
and started to give a try on few subjects were FreeSurfer was having a hard
time to segment brain structures (due to poor contrast).
So I have few q