External Email - Use Caution Why you didn't run recon-all directly ?
Le sam. 27 août 2022 à 11:32, Giulio Siracusano <siracusanogiu...@gmail.com> a écrit : > External Email - Use Caution > > Hello, > > this is true (i.e. reproducibility) for ASEG (when running recon-all -all). > > But, if you use SAMSEG (i.e. running run_samseg instead) you get > slightly different results everytime. This is regardless you use > -threads flag or not. > > My command line is (using the file I've provided in the link in my > previous email): > > run_samseg --input ./I18211_ADNI_12M4_TS_2_20060706103342_2.nii --output > /usr/local/freesurfer/7.2.0/subjects/002_S_0685-I18211/SAMSEG_NIF > > either using this version (1-thread) or a multi-thread > > run_samseg --input ./I18211_ADNI_12M4_TS_2_20060706103342_2.nii --output > /usr/local/freesurfer/7.2.0/subjects/002_S_0685-I18211/SAMSEG_NIF -threads > 6 > > > You get always slightly different results. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1BaXjhVNrGgKUE0ji0Yu6JwJ0c-v0Yav3FCTn-Pmifu2KBCzNWXMsOE-lckYb76uN2LkKrv2JGFWhn22SawskjQ0I7q84C91_cRF-23Z4Gsu6R0xbXeqtWWCVS6y-UFo7GrLMniIBrRczAuncJM328gy95x816jXRde0IojVbr31I6ATCtOAMgjCHr6BQFp3oxgDkNwkWM3rZ-wdlQWJpAvtsxSPGqLf8CkVE7s5PjMtTZkKe4rY90ILIRkOBxP_06MkkAtCtS6yOaaUDgHQOz2WuO6Pe4Wpx9rwoyo2i1XuhXntAe1hgQ39rBYXPo5kNNxnEg3SDsrVFa_y_XaQCGQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1v-fNrOTB8umkRyirv-tSwOU32ZLWx2tJa1L9M92K50aC2frnB4g0j9ltadSb6Hsx3V1qX1HGK256C4eH9E6YDs8Qs7zUfMQFxlFRsyu9nZepFhSsCnsjX1s-wAjG_CVPSwzHWGc3Jutxovw4UKmrn_113HrdI0Z3WP6cQ6lPryCt47uyMPvQUXyYHMofnzR9sEhbWBL6f2X62gvoBfS9DOcZ6JmvbNFb0S0fVWuBsghwLPhiLbxxv-QsSjs_zDKLCs2KElcYGmRKTjetp4q5v4TPSZECIEgNTaOeOC-1yYKAsop3Cz3Gc5-lLup9sSuiYHYz-v1-lZGWCsW59Gkmqw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1v-fNrOTB8umkRyirv-tSwOU32ZLWx2tJa1L9M92K50aC2frnB4g0j9ltadSb6Hsx3V1qX1HGK256C4eH9E6YDs8Qs7zUfMQFxlFRsyu9nZepFhSsCnsjX1s-wAjG_CVPSwzHWGc3Jutxovw4UKmrn_113HrdI0Z3WP6cQ6lPryCt47uyMPvQUXyYHMofnzR9sEhbWBL6f2X62gvoBfS9DOcZ6JmvbNFb0S0fVWuBsghwLPhiLbxxv-QsSjs_zDKLCs2KElcYGmRKTjetp4q5v4TPSZECIEgNTaOeOC-1yYKAsop3Cz3Gc5-lLup9sSuiYHYz-v1-lZGWCsW59Gkmqw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. > >
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