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Hi FreeSurfer community,
I recently discovered the SAMSEG application in the FreeSurfer 7.2.0 release
and started to give a try on few subjects were FreeSurfer was having a hard
time to segment brain structures (due to poor contrast).
So I have few questions to harmonize the SAMSEG and FreeSurfer statistical
files:
1. "samseg.stats" file is not compliant with the "asegstats2table"
application so I was not able to generate a final CSV file with volumetric
results
Is there another solution?
2. "samseg.stats" file does not provide large brain structures like
"BrainSegNotVent" or "SupraTentorialNotVent", is there a way to get them
calculated?
3. "samseg.stats" file does not provide left/right or global cortical
thickness, is there a command line to execute to get these extra values?
Thanks.
Best,
Florent
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