Re: [Freesurfer] Re: mri_surfcluster problem

2007-06-06 Thread Emily Cooper
thanks so much! that seems to have done the trick, emily On 6/4/07, Doug Greve <[EMAIL PROTECTED]> wrote: Sorry, it did fall thru the cr cks. Can you try running it with --no-adjust? When you give it a sign (ie, --pos), it assumes that the input values and threshold are -log10(p) and then adj

Re: [Freesurfer] Re: mri_surfcluster problem

2007-06-04 Thread Doug Greve
Sorry, it did fall thru the cr cks. Can you try running it with --no-adjust? When you give it a sign (ie, --pos), it assumes that the input values and threshold are -log10(p) and then adjusts the threshold for a single-tailed (signed) test, which means that it subtracts log10(2) = 0.3 from th

[Freesurfer] Re: mri_surfcluster problem

2007-06-04 Thread Emily Cooper
hi, sorry to bother the mailinglist again, but i haven't received a response to this question. i just wanted to make sure that it hadn't slipped through the cracks. any help would be very much appreciated, emily On 6/1/07, Emily Cooper <[EMAIL PROTECTED]> wrote: hi, i am having a strange pro