Hi Rosalia
the subject ID specified by -s (001C in your case) has to be unique
within a given SUBJECTS_DIR
cheers
Bruce
On Fri, 19 Oct 2018, Rosalia Dacosta Aguayo
wrote:
External Email - Use Caution
Dear FreeSurfer team,
I am experiencing an error when trying to run a s
External Email - Use Caution
Dear FreeSurfer team,
I am experiencing an error when trying to run a subject from a different
group but with the same number.
I would much appreciate your helping here.
Regards,
Rosalia
rosalia@rosalia-Lenovo-Y520-15IKBN
~/Desktop/MS_STUDY/subjects_c
When you run
recon-all -s HPTU_vol11_2012 -i pacsfiles/MPRAGE.Ser1.Img0.dcm
Does the folder or file called $SUBJECTS_DIR/HPTU_vol11_2012 already exist?
doug
On 09/14/2012 05:00 PM, Carolina Valencia wrote:
> first rename folder *dicom* to *pacsfiles*
> then run
> cvalencia@cvalencia-Preci
what did you rename it to and what is your command line after you rename it?
On 09/14/2012 04:48 PM, Carolina Valencia wrote:
> As I said in the first email I tried the suggestions in the message,
> rename the files, folders, eliminate the folders, starts from scratch
> etc and again with your a
The error output below tells you what to do. If the subject folder
(HPTU_vol11_2012) already exists. Since it has your dicom data in it,
you should not delete it. Instead, rename that directory and keep your
command-line (changing the -i path to point to the new dicom file but
keeping the same
And before you run this, does $SUBJECTS_DIR/HPTU_vol11_2012 exist? BTW,
try it without a slash at the end of the name.
doug
On 09/14/2012 02:09 PM, Carolina Valencia wrote:
>
> Sure!
> cvalencia@cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/volumetria$
>
> recon-all -s HPTU_vol11_
What is your command line?
doug
On 09/14/2012 12:23 PM, Carolina Valencia wrote:
> Hi Freesurfer users:
>
> I'm trying to run recon-all command in a single subject and
> I don't know why always there is an error message about the names, I
> tried the suggestionsin the message, rename the files
Hi Freesurfer users:
I'm trying to run recon-all command in a single subject and I don't know
why always there is an error message about the names, I tried the
suggestionsin the message, rename the files, folders, eliminate the folders
etc
But I don't succeed to star to running my data.
Many thank
