The error output below tells you what to do. If the subject folder 
(HPTU_vol11_2012) already exists. Since it has your dicom data in it, 
you should not delete it. Instead, rename that directory and keep your 
command-line (changing the -i path to point to the new dicom file but 
keeping the same subject name), or change the name of the subject.
doug



On 09/14/2012 03:44 PM, Carolina Valencia wrote:
> the directory exists and trying without / doesn't change anything,
> any advice?
> One week ago, I was processing with the same command line with other 
> subjects without problems,
>
> 2012/9/14 Douglas N Greve <gr...@nmr.mgh.harvard.edu 
> <mailto:gr...@nmr.mgh.harvard.edu>>
>
>     And before you run this, does $SUBJECTS_DIR/HPTU_vol11_2012 exist?
>     BTW, try it without a slash at the end of the name.
>     doug
>
>
>     On 09/14/2012 02:09 PM, Carolina Valencia wrote:
>
>
>         Sure!
>         
> cvalencia@cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/volumetria$
>         recon-all -s HPTU_vol11_2012/ -i
>         HPTU_vol11_2012/dicom/MPRAGE.Ser1.Img0.dcm
>
>         2012/9/14 Douglas N Greve <gr...@nmr.mgh.harvard.edu
>         <mailto:gr...@nmr.mgh.harvard.edu>
>         <mailto:gr...@nmr.mgh.harvard.edu
>         <mailto:gr...@nmr.mgh.harvard.edu>>>
>
>
>             What is your command line?
>             doug
>
>
>
>             On 09/14/2012 12:23 PM, Carolina Valencia wrote:
>         > Hi Freesurfer users:
>         >
>         > I'm trying to run recon-all command in a single subject and
>         > I don't know why always there is an error message about the
>         names, I
>         > tried the suggestionsin the message, rename the files, folders,
>         > eliminate the folders etc
>         > But I don't succeed to star to running my data.
>         > Many thanks,
>         >
>         >
>         > ERROR: You are trying to re-run an existing subject with
>         (possibly)
>         >  new input data (-i). If this is truly new input data, you
>             should delete
>         >  the subject folder and re-run, or specify a different
>         subject name.
>         >  If you are just continuing an analysis of an existing
>         subject, then
>         >  omit all -i flags.
>         >
>         > --
>         > --
>         > *Carolina Valencia Muñoz*
>         >
>         >
>         >
>         >
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>             --
>             Douglas N. Greve, Ph.D.
>             MGH-NMR Center
>         gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>
>         <mailto:gr...@nmr.mgh.harvard.edu
>         <mailto:gr...@nmr.mgh.harvard.edu>>
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>     -- 
>     Douglas N. Greve, Ph.D.
>     MGH-NMR Center
>     gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>
>     Phone Number: 617-724-2358 <tel:617-724-2358>
>     Fax: 617-726-7422 <tel:617-726-7422>
>
>     Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
>
>
>
> -- 
> -- 

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html

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