Re: [Freesurfer] Preparing cortical surface for EEG source localization

/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Yasunari Tosa, Ph.D. Email: [EMAIL PROTECTED] NMR Ctr, Mass. General HospitalTEL: 617-726-4050 Build

Re: [Freesurfer] Freesurfer MAC OSX Installlation

___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Yasunari Tosa, Ph.D. Email: [EMAIL PROTECTED] NMR Ctr, Mass. General Hospital

[Freesurfer] How to fix Perl module path

received the same message. Thanks!! Wan ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Yasunari Tosa, Ph.D. Email: [EMAIL PROTECTED] NMR Ctr, Mass. General HospitalTEL: 617-726-4050 B

[Freesurfer] MacOSX version of mri_annotation2label available

ist 250 CWD command successful. ftp> get mri_annotation2label-20050107-Panther.tar.gz ftp> quit -- Yasunari Tosa, Ph.D. Email: [EMAIL PROTECTED] NMR Ctr, Mass. General HospitalTEL: 617-726-4050 Building 149, 13th Street Charlestown, MA

Re: [Freesurfer] recon-all -stage1 error

__ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Yasunari Tosa, Ph.D. Email: [EMAIL PROTECTED] NMR Ctr, Mass. General HospitalTEL: 617-726-4050 Building 149, 13th Street Charlestown, MA 02129 USA _

Re: [Freesurfer] Problem running recon-all

ted. Thanks, Eswar. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Yasunari Tosa, Ph.D. Email: [EMAIL PROTECTED] NMR Ctr, Mass. General Ho

[Freesurfer] tksurfer for MacOSX second try for those courageous people

du/faqomatic/cache/55.html (thanks to Kevin). install tix fink unstable package.) 2. Please keep the old tksurfer.tcl (rename it) just in case and replace it with the new one. This tksurfer uses Tcl/Tk 8.4 version, not 8.3. If you don't have these, don't install. Tosa Yas

Re: [Freesurfer] Stats and viewing parcellation problem

nu set 6: can't read "glMenuGroups(mg_CurvatureLoaded)": no such variable surfer: couldn't dis/enable menu set 7: can't read "glMenuGroups(mg_LabelLoaded)": no such variable surfer: couldn't dis/enable menu set 8: can't read "glMenuGroups(mg_FieldSignLoade

Re: [Freesurfer] Stats and viewing parcellation problem

grade. Thanks. Xander On Tue, 2004-12-07 at 11:44, Yasunari Tosa wrote: Fixed MacOSX version of tksurfer is available on our ftp page. $ ftp surfer.nmr.mgh.harvard.edu > username: anonymous > passwd: (your email address) > cd /transfer/outgoing/birn/tosa/Update/Mac > bin > get

Re: [Freesurfer] Stats and viewing parcellation problem

3756992 bin table Cannot allocate memory Command Finished ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.e

Re: [Freesurfer] wmfill

nates or do you need to download the additional mni software? and, is this step included in the process volume command when using the csurf interface? thanks, margaret On Mon, 6 Dec 2004, Yasunari Tosa wrote: Hi, Margaret The head is tilted almost 10 degrees. This makes it difficult to cut the

Re: [Freesurfer] wmfill

iling list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Yasunari Tosa, Ph.D. Ema

Re: [Freesurfer] wmfill

ate a transform with that separate MNI software? Thanks, Margaret On Wed, 1 Dec 2004, Yasunari Tosa wrote: Hi, The log says that it could not find $subject/mri/transforms/talairach.xfm for this volume. Tosa Margaret Duff wrote: The log file is below. And at the end it says command finished

Re: [Freesurfer] wmfill

___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Yasunari Tosa, Ph.D. Email: [EMAIL PROTECTED] NMR Ctr, Mass. General HospitalTEL: 617-726-4050 Building 149, 13th Street

Re: [Freesurfer] RAS to Talairach

mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Yasunari Tosa, Ph.D. Email: [EMAIL PROTECTED] NMR Ctr, Mass. General HospitalTEL: 617-726-4050 Building 149, 13th Street Charlestown, MA 02129 USA

Re: [Freesurfer] Another question

ist [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Yasunari Tosa, Ph.D. Email: [EMAIL PROTECTED] NMR Ctr, Mass. General HospitalTEL: 617-726-4050 Building 149, 13th Street Charlestown, MA

Re: [Freesurfer] (no subject)

_ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Yasunar

[Freesurfer] MacOSX mri_convert probelm fixed

. How-to-get-it == ftp surfer.nmr.mgh.harvard.edu use anonymous and passwd as your email address > cd pub/dist > get mri_convert-040920-Darwin.gz Thank you. Tosa Yasunari Tosa, Ph.D. Email: [EMAIL PROTECTED] NMR Ctr, Mass. General HospitalTEL: 617-726-4050 Buil

Re: [Freesurfer] mincinfo error opening "orig.mnc"

Hi, Which version of freesurfer tools are you using? I get the following for bert subject: $ mincinfo orig.mnc file: orig.mnc image: unsigned byte 0 to 254 image dimensions: xspace yspace zspace dimension name length stepstart -- -- -

Re: [Freesurfer] Update for mris_register

The filenames are wrong. The correct ones are: mris_register-040916-Darwin.tar.gz 901 KB 09/16/2004 04:58:00 PM mris_register-040916-Linux.tar.gz

Re: [Freesurfer] edits not effective

Is there a reason why you don't want to use the talairach.xfm? MNI mritotal does a reasonable job when the image is a good T1 volume. Making mri_fill work is best done by using the talairach.xfm. Tosa Yasunari Tosa, Ph.D. Email: [EMAIL PROTECTED] NMR Ctr, Mass. General Hos

Re: [Freesurfer] Freesurfer and brainstem

nk between two regions(aboe and below the brain stem), it will be connected. Your task is to remove this connection by editing the wm volume. Tosa Yasunari Tosa, Ph.D. Email: [EMAIL PROTECTED] NMR Ctr, Mass. General HospitalTEL: 617-726-4050 Building 149, 13th Street Charl

Re: [Freesurfer] mritotal / Out of memory

freesurfer assumes you are running cshell or tcsh shell. % setenv LANG C Tosa Patrice Seyed wrote: Hi, I am experiencing the following error when running recon-all relating the mritotal: mritotal -verbose -debug -clobber -protocol icbm orig/orig.mnc transforms/talair ach.xfm Out of memory! ERROR: m

[Freesurfer] R L flipping using mri_convert

Hi, For those freesurfer CORONAL volume, mri_convert -iid 1 0 0 -ijd 0 0 -1 -ikd 0 1 0 orig flipped (fake the R direction to be the L direction). Tosa Mark A. Pinsk wrote: Hello, we are desperately in search of a way to flip our freesurfered data. There was a post a while back referring to

[Freesurfer] need clarification of analyze 7.5 format orient value

4 = coronal-flipped R→L S→I P→A 5 = sagittal-flipped P→A I→S L→R Note that the second and third axis of "sagittal flipped" are flipped ;-) Tosa -- Yasunari Tosa, Ph.D. R&D Engineeremail: [EMAIL PROTECTED]

Re: [Freesurfer] non-primate brains : for high res processing

have to run each routine by hand with additional options. You may try "cheating" freesurfer routines by changing the voxel size to be 1 mm, even though the actual size is less than 1mm (i.e. editing orig/COR-.info information). Tosa Yasunari Tosa, Ph.D. R&D Engineer

no new release today

Hi, Freesurfer people: I could not schedule a new release today :-( Sorry for keeping you waiting. Tosa -- Yasunari Tosa, Ph.D. R&D Enginneremail: [EMAIL PROTECTED] Mass. General Hospital NMR Center phone: Building 149-2301