the extra memory
that the 32bit OS would otherwise not use. Is anyone else with a 32b linux box
having memory errors?
Thanks,
Ammar
From: Anastasia Yendiki [ayend...@nmr.mgh.harvard.edu]
Sent: Tuesday, October 11, 2011 1:23 PM
To: Moiyadi, Ammar
Cc
nodif_brain_mask is 3,276,800.
Ammar
From: Anastasia Yendiki [ayend...@nmr.mgh.harvard.edu]
Sent: Friday, September 23, 2011 11:41 AM
To: Moiyadi, Ammar
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] Tracula Memory Requirements
Hi Ammar - Can you check
AM
To: Moiyadi, Ammar
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] Tracula Memory Requirements
Hi Ammar - Can you check the voxel dimensions of one of the merged_* files
in the bedpost directory, and also how many voxels are included in the
mask that was used for bedpost? It seems
Hi Anastasia,
These are both linux ubuntu 10.04 lts machines. The DICOM images are 1300
slices each 140 KB.
Thanks,
Ammar
From: Anastasia Yendiki [ayend...@nmr.mgh.harvard.edu]
Sent: Friday, September 23, 2011 10:30 AM
To: Moiyadi, Ammar
Cc: freesurfer
Hi Freesurfers,
I've been getting a memory allocation error (below) when running trac prep and
trac paths on my computer with 6 gb ram. Since I was able to run these steps on
a computer with 16 gb, I want to know, what is the minimum memory requirement
for running tracula? Is the memory alloca
d.edu]
Sent: Thursday, August 18, 2011 10:51 AM
To: Moiyadi, Ammar
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Trac paths error - bedpost files not found
Was this by any chance an older version of bedpost that you ran? Older
versions didn't use to create mean_dsamples.nii.gz.
Hi Freesurfers - I am encountering an error in trac-all -paths where it cannot
find the mean_dsamples.nii.gz file in my dmri.bedpostX directory since it was
not created during the bedpost step. Because I ran the original bedpost (not
the Seychelles version) I was wondering if this output file w
ions for how to proceed?
Ammar Moiyadi, BS
Professional Research Assistant
Department of Psychiatry
University of Colorado Anschutz Medical Campus
303-724-5490
From: Anastasia Yendiki [ayend...@nmr.mgh.harvard.edu]
Sent: Wednesday, August 03, 2011 10:37 AM
To:
From: Anastasia Yendiki [ayend...@nmr.mgh.harvard.edu]
Sent: Wednesday, August 03, 2011 10:25 AM
To: Moiyadi, Ammar
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] trac-all -path errors
Hi Ammar - It looks like it's the same text file formatting issue
Hi,
I am also getting the error where the txt files cannot be opened because they
were not created beforehand. Where does the trac-all -prior step take place?
Does it appear within the trac-all -prep script?
Thank you,
Ammar Moiyadi, BS
Professional Research Assistant
Department of Psychiatry
U
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