Hi,
I am also getting the error where the txt files cannot be opened because they
were not created beforehand. Where does the trac-all -prior step take place?
Does it appear within the trac-all -prep script?
Thank you,
Ammar Moiyadi, BS
Professional Research Assistant
Department of Psychiatry
University of Colorado Anschutz Medical Campus
303-724-5490
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Subject: Freesurfer Digest, Vol 89, Issue 99
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Today's Topics:
1. trac-all -path errors (Ping-Hong Yeh)
2. Re: trac-all -path errors (Priti Srinivasan)
----------------------------------------------------------------------
Message: 1
Date: Fri, 29 Jul 2011 11:09:28 -0400
From: Ping-Hong Yeh <pinghong...@gmail.com>
Subject: [Freesurfer] trac-all -path errors
To: freesurfer@nmr.mgh.harvard.edu
Message-ID:
<cal1nnmp2+kde5cnmvh4-qhnvsemeqa7ajq+cp-qpftmgv3a...@mail.gmail.com>
Content-Type: text/plain; charset=ISO-8859-1
Hi,
I got the error running "trac-all -path -c configure.txt"
ERROR: Could not open
${SUBJECTS_DIR}/$Subject/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt
I can only find only image files in the "dlabel/diff" directory, but
not text files.
Which step(s) create the lh.cst_AS_avg33_mni_flt_cpts_5.txt file?
Thanks,
Ping
------------------------------
Message: 2
Date: Fri, 29 Jul 2011 11:26:13 -0400 (EDT)
From: "Priti Srinivasan" <rspr...@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] trac-all -path errors
To: "Ping-Hong Yeh" <pinghong...@gmail.com>
Cc: freesurfer@nmr.mgh.harvard.edu
Message-ID:
<42727.132.183.139.239.1311953173.squir...@mail.nmr.mgh.harvard.edu>
Content-Type: text/plain;charset=iso-8859-1
Hi Ping,
The text files get created in the trac-all -prior stage. Maybe something
went wrong in that step. Is this the case for all the tracts or just for
this tract? If you can send us the trac-all.log file under the scripts
directory it'll be easier to troubleshoot as to what went wrong.
-Priti
> Hi,
>
> I got the error running "trac-all -path -c configure.txt"
>
> ERROR: Could not open
> ${SUBJECTS_DIR}/$Subject/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt
>
>
> I can only find only image files in the "dlabel/diff" directory, but
> not text files.
>
> Which step(s) create the lh.cst_AS_avg33_mni_flt_cpts_5.txt file?
>
> Thanks,
>
> Ping
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
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>
>
>
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