I believe I'm running the latest version of fsl for Ubuntu, 4.1.4 Ammar Moiyadi, BS Professional Research Assistant Department of Psychiatry University of Colorado Anschutz Medical Campus 303-724-5490 ________________________________________ From: Anastasia Yendiki [ayend...@nmr.mgh.harvard.edu] Sent: Thursday, August 18, 2011 10:51 AM To: Moiyadi, Ammar Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Trac paths error - bedpost files not found
Was this by any chance an older version of bedpost that you ran? Older versions didn't use to create mean_dsamples.nii.gz. On Thu, 18 Aug 2011, Moiyadi, Ammar wrote: > Hi Freesurfers - I am encountering an error in trac-all -paths where it > cannot find the mean_dsamples.nii.gz file in my dmri.bedpostX directory since > it was not created during the bedpost step. Because I ran the original > bedpost (not the Seychelles version) I was wondering if this output file was > specific to the other version. I have a feeling bedpost is not getting > through its entire process but I don't receive any error messages as feedback > - once it reaches 47 slices processed it starts queing the post processing > stage and then the program ends. Is it possible that the post processing > stage has not completed and as a result the required files are not being > created? > Currently I have the following files in my bedpost output directory: > dyads1.nii.gz > dyads2.nii.gz > mean_th1samples.nii.gz > mean_th2samples.nii.gz > mean_f1samples.nii.gz > mean_f2samples.nii.gz > mean_ph1samples.nii.gz > mean_ph2samples.nii.gz > merged_th1samples.nii.gz > merged_th2samples.nii.gz > merged_f1samples.nii.gz > merged_f2samples.nii.gz > merged_ph1samples.nii.gz > merged_ph2samples.nii.gz > nodif_brain_mask.nii.gz > > It appears I am missing both the mean_dsample and dyads_dispersion files. Any > ideas why these files haven't been created and when they should have been > created during bedpost? > > Thanks for your help, > > Ammar Moiyadi > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
