Hi Freesurfers - I am encountering an error in trac-all -paths where it cannot find the mean_dsamples.nii.gz file in my dmri.bedpostX directory since it was not created during the bedpost step. Because I ran the original bedpost (not the Seychelles version) I was wondering if this output file was specific to the other version. I have a feeling bedpost is not getting through its entire process but I don't receive any error messages as feedback - once it reaches 47 slices processed it starts queing the post processing stage and then the program ends. Is it possible that the post processing stage has not completed and as a result the required files are not being created? Currently I have the following files in my bedpost output directory: dyads1.nii.gz dyads2.nii.gz mean_th1samples.nii.gz mean_th2samples.nii.gz mean_f1samples.nii.gz mean_f2samples.nii.gz mean_ph1samples.nii.gz mean_ph2samples.nii.gz merged_th1samples.nii.gz merged_th2samples.nii.gz merged_f1samples.nii.gz merged_f2samples.nii.gz merged_ph1samples.nii.gz merged_ph2samples.nii.gz nodif_brain_mask.nii.gz
It appears I am missing both the mean_dsample and dyads_dispersion files. Any ideas why these files haven't been created and when they should have been created during bedpost? Thanks for your help, Ammar Moiyadi _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
