Re: [Freesurfer] problem using mri_vol2label for subcortical regions

_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa, Italy e-mail: lucia.bill...@ifc.cnr.it _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > On 7 May 2018, at 19:32, Douglas N. Gr

Re: [Freesurfer] problem using mri_vol2label for subcortical regions

CTS_DIR/fsaverage/mri/aseg.mgz --id 8 --l ./tests_label/8.label --surf fsaverage lh white But I have the following error message: ERROR: dim mismatch between surface (163842) and input (16777216) Could you please help me? Thanks a lot in advance Best regards Lucia Billeci _ _ _ _ _ _ _ _ _ _ _

Re: [Freesurfer] problem using mri_vol2label for subcortical regions

External Email - Use Caution Dear Douglas, thanks a lot. This can solve my problem. Could you please give my some explanations about how to open and use the tool? Thanks Regards Lucia _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical

Re: [Freesurfer] problem using mri_vol2label for subcortical regions

_ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa, Italy e-mail: lucia.bill...@ifc.cnr.it _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > On 2 May 2018, at 17:05, Bruce Fischl wrote: > > Hi Lucia > >

Re: [Freesurfer] problem using mri_vol2label for subcortical regions

mri_surfcluster as I get an empty file. Hope Doug can help me. Thanks Lucia _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa, Italy e-mail: lucia.bill...@ifc.cnr.it

[Freesurfer] problem using mri_vol2label for subcortical regions

: mri_vol2label --c $SUBJECTS_DIR/fsaverage/mri/aseg.mgz --id 8 --l ./tests_label/8.label --surf fsaverage lh white But I have the following error message: ERROR: dim mismatch between surface (163842) and input (16777216) Could you please help me? Thanks a lot in advance Best regards Lucia Billeci

Re: [Freesurfer] TRACULA statistics

203432 864.0 ctx-rh-transversetemporal 0. 0. 0. 0. 0. 110 2035 238 6426.0 ctx-rh-insula 0. 0. 0. 0. 0. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _Dr. Lucia Billeci

Re: [Freesurfer] TRACULA statistics

-lateralorbitofrontal ctx-lh-medialorbitofrontal ctx-lh-middletemporal ctx-lh-rostralanteriorcingulate ctx-lh-superiortemporal ctx-lh-temporalpole ctx-lh-insula and for each area I have the volume of the path. Is it correct? Thanks Lucia _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD

Re: [Freesurfer] TRACULA statistics

left uncinate fascicles how can I know which >> are the ROIs of the statistical output from the cortical parcellation that >> it connects? >> Thanks >> Lucia >> On Oct 14, 2013, at 11:08 PM, Lucia Billeci wrote: >> >> Hi Anastasia, >> thanks for you answ

Re: [Freesurfer] TRACULA statistics

cortical parcellation that it connects? Thanks Lucia On Oct 14, 2013, at 11:08 PM, Lucia Billeci wrote: > Hi Anastasia, > > thanks for you answer. Now I have understood the meaning of that parameter. > > Best regards > Lucia > > > On Oct 14, 2013, at 10:58

Re: [Freesurfer] TRACULA statistics

pd.nii.gz). It depends on the configuration > parameters (nsample, nkeep), so it'll be the same if these configuration > parameters are the same. > > Hope this helps, > a.y > > On Mon, 14 Oct 2013, Lucia Billeci wrote: > >> Dear all, >>

[Freesurfer] TRACULA statistics

ards Lucia _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa ITALY Tel: +39-0506213204 e-mail: lucia.bill...@

[Freesurfer] Fwd: Error running TRACULA

Thanks a lot Anastasia for your help. I will install the new version and run it on my data. Best wishes Lucia Inizio messaggio inoltrato: > Da: Anastasia Yendiki > Oggetto: Re: [Freesurfer] Error running TRACULA > Data: 02 ottobre 2013 17:23:42 GMT+02:00 > A: Lucia Billeci >

Re: [Freesurfer] Error running TRACULA

oblem? Do I need to change memory allocation? Thanks again. Lucia _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa ITALY Tel: +39-0506213204 e-mail: lucia.bill...@ifc.c

Re: [Freesurfer] Error running TRACULA

Hi Anastasia here are the files Thanks Lucia bvals Description: Binary data bvecs Description: Binary data _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa ITALY Tel: +39

Re: [Freesurfer] Error running TRACULA

e the same number of entries I removed the blank line as you suggested (see attach) so I don't understand the error Thanks Lucia bvals Description: Binary data bvecs Description: Binary data _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical

[Freesurfer] Error running TRACULA

Dear all, I am trying to apply TRACULA on my DATA (GE data) but when I run the following command: trac-all -prep -c /Users/Desktop/FreesurferData/SUBJECT1/dmrirc_subject1 after eddy current correction, I obtain this error: mv -f /Users/luciabilleci/Desktop/FreesurferData/FRANCINI1/dmri/bvecs

[Freesurfer] question about TRACULA

Regards Lucia Billeci_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa ITALY Tel: +39-0506213204 e-mail: lucia.bill...@ifc.cnr.it