External Email - Use Caution Dear Brouce,
thanks again. I would like exactly how to set mri_vol2label for subcortical regions as the way I used give me all the values of the first column equal to -1. This is a problem when I want to obtain obtain the centroid of the ROI using mri_surfcluster as I get an empty file. Hope Doug can help me. Thanks Lucia _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa, Italy e-mail: lucia.bill...@ifc.cnr.it _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > On 2 May 2018, at 16:01, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > > Hi Lucia > > can you cc the list so others can answer? You can't get a surface-based label > for a subcortical region as they aren't on (or close) to the surrface. I > think mri_vol2label is the right binary to create a volumetric ROI for each > one, but Doug will know > cheers > Bruce > > On Wed, 2 May 2018, Lucia Billeci wrote: > >> External Email - Use Caution >> Dear Bruce, >> thanks for your answer. >> I would like to obtain .label file for each subcortical region. I have >> tried the commands I >> reported in the previous messages but probably they are not correct. Could >> you please indicate me >> the correct way to have the .label file for subcortical regions? I am not >> sure if >> using mri_vol2label is the right way or maybe there is another strategy. >> Thanks >> regards >> Lucia >> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ >> Dr. Lucia Billeci, PhD >> Institute of Clinical Physiology (IFC) National Research Council (CNR) >> via Moruzzi 1, 56124, Pisa, Italy >> e-mail: lucia.bill...@ifc.cnr.it >> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
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