mewhere else I can get the tools from? I know they now come
> > packaged
> > with the full freesurfer program but I don't want to download the whole
> > thing as
> > I've downloaded 3 versions of freesurfer already!
> >
> > thanks!
> >
download the whole thing as
I've downloaded 3 versions of freesurfer already!
thanks!
Jane
--
Dr Jane Aspell
Department of Experimental Psychology, University of Oxford,
South Parks Road, Oxford, OX1 3UD
___
Freesurfer mailing list
he cortex and
shows gaps in the blue/yellow colouring?
thanks!
jane
In message <[EMAIL PROTECTED]> Doug Greve
<[EMAIL PROTECTED]> writes:
>
> You can try putting all the runs into a single bold directory. The
> motion correction will (do it's best to) align them.
&g
cortical surface.
I wonder if this could be due to the inaccuracy of the registration given that
I only used the register.dat from the registration of the first session.
hope that makes sense!
i'd be grateful for any help with this!
Jane
--
Dr Jane Aspell
Department of Experimental Psychol
tcl script: mk-fieldsign.tcl
we are still stuck so would be really grateful for any tips!
thanks very much,
Jane
In message <[EMAIL PROTECTED]> Bruce
Fischl <[EMAIL PROTECTED]> writes:
> hmmm, do you have it? If not, I've attached a copy.
>
> cheers,
> Bruc
> e
>
7;ve attached a copy.
>
> cheers,
> Bruc
> e
> On Tue, 3 Jan 2006, Jane Aspell wrote:
>
> > Hi
> >
> > I would be really grateful if someone could help me with the problems I am
> > having with mk-fieldsign. Even after installing a new version of freesurfer
&
ut this should not be necessary, as tkmedit that you have does not use
> this library (I am truly puzzled why 'ldd' shows that it needs these
> libs).
>
> Thanks,
>
> Nick
>
>
> On Mon, 2005-12-12 at 11:40 +, Jane Aspell wrote:
> > hi nick
> >
not use
> this library (I am truly puzzled why 'ldd' shows that it needs these
> libs).
>
> Thanks,
>
> Nick
>
>
> On Mon, 2005-12-12 at 11:40 +, Jane Aspell wrote:
> > hi nick
> >
> > when i type >ldd `which tkmedit` i get the ouput
>
> and
>
> uname -a
>
> A last ditch effort is to install the itcl libs, from this site:
>
> http://rpmfind.net/linux/rpm2html/search.php?query=itcl
>
> But this should not be necessary, as tkmedit that you have does not use
> this library (I am truly puzzled why
FSL_DIR}/etc/fslconf/fsl.csh
>
> like this:
>
> # source ${FSL_DIR}/etc/fslconf/fsl.csh
>
> Another option is to type this after sourcing the freesurfer setup file:
>
> unsetenv TCLLIBPATH
>
> This last option is just a guess at a fix though.
>
> Nick
>
ED]> Doug
Greve <[EMAIL PROTECTED]> writes:
>
> That's a pretty old version. Can you download and install a new version?
>
> I actually don't know that much about the interpretation of the color
> wheel. Maybe Nouchine or Sari can help with this.
>
> doug
mo ago, but I thought I fixed them
> all.
>
> doug
>
>
>
> On Thu, 24 Nov 2005, Jane Aspell wrote:
>
> > hi again
> > I have been proceeding with the retinotopy analysis using FsFast,
following the
> > instructions at:
> >
https://surf
gt;
> doug
>
>
>
> On Thu, 24 Nov 2005, Jane Aspell wrote:
>
> > hi again
> > I have been proceeding with the retinotopy analysis using FsFast, following
> > the
> > instructions at:
> > https://surfer.nmr.mgh.harvard.edu/fswiki/FsFastIndividu
have a occipital patch made.
Thought that might be your trouble.
Stephanie McMains
On Nov 24, 2005, at 12:09 PM, Jane Aspell wrote:
hi again
I have been proceeding with the retinotopy analysis using FsFast, following
the
instructions at:
https://surfer.nmr.mgh.harvard.edu/fswiki/
Fs
dian etc.?
thanks again for your help!
jane
--
Dr Jane Aspell
Department of Experimental Psychology, University of Oxford,
South Parks Road, Oxford, OX1 3UD
In message <[EMAIL PROTECTED]> Doug Greve
<[EMAIL PROTECTED]> writes:
>
> that's a bug in the wiki, "
Can you double check
> that the sessions in the sessidfile are in the current directory?
>
>
> Jane Aspell wrote:
>
> >Hi
> >
> >Thanks for all your previous help with freesurfer.
> >
> >I am trying to use FsFast to do retinotopy analysis and have been follo
similar
error of not been able to find my (particular subject's) session. i believe i
have set up the all the directory structures etc correctly for the sessions
format as previous steps worked fine.
any ideas what's going wrong?
thanks
Jane Aspell
___
Hi
I have been trying to run make_average_surface but get the error below. Any idea
what the problem is?
Many thanks,
Jane Aspell
>make_average_surface --subjects jane kader anna
make_average_surface
input subjects: jane kader anna
output subj
hi
i need to view several overlays simultaneously (to see where my activation lies
relative to retinotopic map overlays) on a surface. is there no way of doing
this with freesurfer? its seems like a function that a lot of users would need.
in one posting regarding this you suggested loading the o
hi
i need to view several overlays simultaneously (to see where my activation lies
relative to retinotopic map overlays) on a surface. is there no way of doing
this with freesurfer? its seems like a function that a lot of users would need.
in one posting regarding this you suggested loading the o
hi
i need to view several overlays simultaneously (to see where my activation lies
relative to retinotopic map overlays) on a surface. is there no way of doing
this with freesurfer? its seems like a function that a lot of users would need.
in one posting regarding this you suggested loading the o
hi
i need to view several overlays simultaneously (to see where my activation lies
relative to retinotopic map overlays) on a surface. is there no way of doing
this with freesurfer? its seems like a function that a lot of users would need.
in one posting regarding this you suggested loading the o
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